Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C22
         (378 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)                114   2e-26
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)             30   0.72 
SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_30815| Best HMM Match : Sas10_Utp3 (HMM E-Value=1)                  27   3.8  
SB_9191| Best HMM Match : TolA (HMM E-Value=1)                         27   3.8  
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)                       27   5.1  
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             27   5.1  
SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)                   27   5.1  
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               27   6.7  
SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)                    27   6.7  
SB_44630| Best HMM Match : HECT (HMM E-Value=0)                        27   6.7  
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)                      27   6.7  
SB_52286| Best HMM Match : Clathrin (HMM E-Value=1.8)                  26   8.8  
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)                    26   8.8  
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)              26   8.8  
SB_36705| Best HMM Match : RRF (HMM E-Value=0.26)                      26   8.8  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)                26   8.8  

>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
          Length = 166

 Score =  114 bits (275), Expect = 2e-26
 Identities = 62/109 (56%), Positives = 70/109 (64%), Gaps = 4/109 (3%)
 Frame = +3

Query: 9   LKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV-RTETVRRGAVGR 185
           LKSRGYV+E+F W+H+YW LTNEGI YLR FLHLP EIVPATL+R V R ET R    G 
Sbjct: 50  LKSRGYVEEKFCWKHYYWNLTNEGITYLRDFLHLPTEIVPATLRRQVTRAETARPRPKGM 109

Query: 186 --PDAPARTAE-DRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFGRG 323
             P  P    + DR +YRR PP G   + K   G G    EFR GFGRG
Sbjct: 110 DGPRGPGEGGDRDRESYRRGPPPGV--EGKGGAGSGFKP-EFRQGFGRG 155


>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
          Length = 1086

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
 Frame = -3

Query: 325 RPLP-KPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASGLPTAPRRTVSVR 149
           RP P + P  S+ A P    A                 +SA+  GAS    A   +VS  
Sbjct: 707 RPQPAQQPAQSSGATPLEAQAEAPTVSTTTCGAAATKTTSAISQGASTSLQATTHSVSSP 766

Query: 148 TDLFRVAGTISGGKCRKILRYSIPS 74
           T++    G  S       +RY++PS
Sbjct: 767 TNVTTQDGATSRQCTTATVRYTVPS 791


>SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = +3

Query: 90  LRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKA 269
           L  F+H  PE      +R  R+    R   GR ++ + T E RSA +      AP D   
Sbjct: 146 LPTFIHNEPETTTNNKRRMHRSLKFFRRPFGRTESNSDTDEARSARKTVHFKDAPMD-LT 204

Query: 270 DVGP 281
           D+ P
Sbjct: 205 DINP 208


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +3

Query: 183 RPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFGRGRSAP 335
           RP+ P RT E     R + P G  + ++    P         G  RGRS P
Sbjct: 679 RPERPDRTGERGREPRYSTPQGPDYHRRPSPSPPGPPRNAPYGPPRGRSPP 729



 Score = 27.5 bits (58), Expect = 3.8
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +3

Query: 102  LHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGP 281
            LH P E   ATL  ++RT   +  A G+     +  ++     R+P  G   D+ ADV  
Sbjct: 967  LHPPNE---ATLPPTLRTTPQKSPAPGKEGKKVKKKKEGKKSGRSPREGVVTDEGADVDM 1023

Query: 282  GSADVEFR 305
            G    E +
Sbjct: 1024 GLGGEEVK 1031


>SB_30815| Best HMM Match : Sas10_Utp3 (HMM E-Value=1)
          Length = 864

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -1

Query: 216 YLQLFVLEHQACQLHHDVLSLYALTSSGLLVQF--QEVSAGKF*GIQYPHLLNTSKN 52
           +LQL V+ H A +++H +L + + T  G L  F  Q +   +F  ++   L N+  N
Sbjct: 509 FLQLIVVAHDALRVYHQILGI-SHTPGGELTLFFEQPIRRPRFVALRQCSLFNSWYN 564


>SB_9191| Best HMM Match : TolA (HMM E-Value=1)
          Length = 541

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +3

Query: 102 LHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGP 281
           LH P E   ATL  ++RT   +  A G+     +  ++     R+P  G   D+ ADV  
Sbjct: 157 LHPPNE---ATLPPTLRTTPQKSPAPGKEGKKVKKKKEGKKSGRSPREGVVTDEGADVDM 213

Query: 282 GSADVEFR 305
           G    E +
Sbjct: 214 GLGGEEVK 221


>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
          Length = 1014

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 181 PTAPRRTVSVRTDLFRVAGTISGG 110
           P    RTV++  D+F  AGT++GG
Sbjct: 464 PKVKTRTVTLEGDVFDPAGTLTGG 487


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 6   RLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 152
           ++ SRG+VK+ +A+    W   +  + +L  +L L P+I   +  R++R
Sbjct: 140 KIISRGFVKDSYAYLRDTWNWLDSLVVFLS-YLSLAPDIASLSGIRTLR 187


>SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)
          Length = 515

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 144 SVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDK-KADV 275
           S     ++   +G  +AP+   +D  AY   PP   P DK K+D+
Sbjct: 91  STENNVIKEDVIGPTNAPS---DDNDAYPTMPPDEEPKDKHKSDI 132


>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 121  ISGGKCRKILRYSIPSFVKYQ*KCLHANCSLTY 23
            +SGG   + LRY+ P+ V     C  A CS+ Y
Sbjct: 3125 LSGGNLDRGLRYTAPNGVTVTSSCGLAPCSICY 3157


>SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)
          Length = 593

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 18/77 (23%), Positives = 32/77 (41%)
 Frame = +3

Query: 75  EGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAP 254
           +G  +LR+       +  ATL   V   ++    VGRP    R    +++ R++   G  
Sbjct: 335 QGYRHLRLLAFDGDPLDSATLFVHVTITSINEAGVGRPPNMGRAKTKKTSLRKS-KKGRE 393

Query: 255 HDKKADVGPGSADVEFR 305
           +     VG  + D  F+
Sbjct: 394 YTSMKTVGVKAVDETFK 410


>SB_44630| Best HMM Match : HECT (HMM E-Value=0)
          Length = 1003

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -1

Query: 288 LNQGRHQPSYHEELQLVVRADKLIYLQLFVLEHQACQLHH--DVLSLYALTSSGLLVQFQ 115
           LN+   + SYHE  +L V A    Y  L  LE Q        +   ++ +T S  +V+  
Sbjct: 405 LNESFKKESYHESTELDVSAVHKAYEMLLALEPQEAFAGPLLNATEIHLITLSSQVVKVD 464

Query: 114 EV 109
           EV
Sbjct: 465 EV 466


>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
          Length = 585

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 231 RAPPAGAPHDKKADVGP 281
           RA P  APHDKK+  GP
Sbjct: 544 RARPGLAPHDKKSGKGP 560


>SB_52286| Best HMM Match : Clathrin (HMM E-Value=1.8)
          Length = 446

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = -3

Query: 328 DRPLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASGLPTAPRRTVSV 152
           +R L     + TS++   TS+  +            ++S   R   +GLPT P   + V
Sbjct: 61  NRELSVNSSSETSSKSESTSSSTTTTTESSQSTYVEEVSKVAREDVAGLPTTPAAPIPV 119


>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 6074

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 160  VSVRTDLFRVAGTISGGKCRKILRYSIPSFVKYQ*KCLHANCSLTY 23
            VS+R D+ RV  + S       +RYS P     +   ++AN  + Y
Sbjct: 1347 VSIRADIIRVHASDSDSGFNSEIRYSFPVGFVVKPFAINANTGMIY 1392


>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
          Length = 179

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +3

Query: 123 VPATLKRSVRTETVRRGAVGRPDAPARTAEDR--SAYRRAPPAGAPHDKKADVGPGSADV 296
           VPA    + R  T   G +   D  +RTA +R  S +RR  P G     +    P +A +
Sbjct: 45  VPAHFNDAQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAI 104

Query: 297 EFRGGFGRGRSA 332
            +     RG  A
Sbjct: 105 AYGLDKARGGKA 116


>SB_36705| Best HMM Match : RRF (HMM E-Value=0.26)
          Length = 397

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 66  LTNEGIEYLRI-FLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPP 242
           L + G E LRI F  L P +  A+L    RT     G    P    +   D+  Y+  PP
Sbjct: 121 LIDGGTEALRIVFSRLHPSL-SASLSHHQRT---LYGLWKPPRGKKKILTDKQWYKLYPP 176

Query: 243 AGAPHDKKADV 275
            G+P+ +  D+
Sbjct: 177 TGSPNIQDFDI 187


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +3

Query: 186 PDAP-ARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGF 314
           P AP  R     + + R PP GAPH K    G     + + G +
Sbjct: 574 PGAPHPRVPPPGTPHPRVPPPGAPHPKVPPPGAPYQRLPYSGAY 617


>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
          Length = 672

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 322 PLPKPPLNSTSAEPGPTS 269
           PLP PP+    + PGPTS
Sbjct: 89  PLPPPPMMPRVSMPGPTS 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,288,247
Number of Sequences: 59808
Number of extensions: 185637
Number of successful extensions: 751
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)