Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C22
(378 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 91 2e-19
Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical pr... 29 0.83
Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical pr... 29 0.83
Z81092-1|CAB03144.1| 143|Caenorhabditis elegans Hypothetical pr... 28 2.5
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 27 3.4
Z93374-6|CAB07559.1| 108|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p... 27 5.9
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical pr... 27 5.9
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical pr... 26 7.8
U55857-11|AAA98036.1| 153|Caenorhabditis elegans Hypothetical p... 26 7.8
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 26 7.8
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 26 7.8
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 26 7.8
AF088288-1|AAC98295.1| 826|Caenorhabditis elegans caspase-relat... 26 7.8
AF045646-5|AAK29828.1| 225|Caenorhabditis elegans Hypothetical ... 26 7.8
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 26 7.8
AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein. 26 7.8
AC084197-7|AAM44398.1| 826|Caenorhabditis elegans Caspase prote... 26 7.8
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 26 7.8
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 26 7.8
>AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 10 protein.
Length = 149
Score = 91.1 bits (216), Expect = 2e-19
Identities = 54/109 (49%), Positives = 61/109 (55%)
Frame = +3
Query: 9 LKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRP 188
L SR VKEQFAWRH+YWYLT+ GI YLR +L LP EIVPAT+K R V P
Sbjct: 50 LASRELVKEQFAWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPH-EDRAP 108
Query: 189 DAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFGRGRSAP 335
A DR AYR +K + GPG A V +R GFGRG P
Sbjct: 109 RAAQGEKGDREAYRT--------EKVTEAGPGGAPV-YRAGFGRGAPPP 148
>Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical protein
T21E8.3 protein.
Length = 1243
Score = 29.5 bits (63), Expect = 0.83
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = -1
Query: 375 SFSFFTYIFLLKLRVQIDLFRNLL*IQHQLNQGRHQPSYHEELQLVVRADKLIY 214
SF F TY+ L K + +D++ +L+ + + N SY + + + + LI+
Sbjct: 924 SFKFGTYLILQKEVIPMDMYLSLITLSYTSNMAGSAISYMPDFRKAIHSAGLIF 977
>Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical protein
T21E8.3 protein.
Length = 1243
Score = 29.5 bits (63), Expect = 0.83
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = -1
Query: 375 SFSFFTYIFLLKLRVQIDLFRNLL*IQHQLNQGRHQPSYHEELQLVVRADKLIY 214
SF F TY+ L K + +D++ +L+ + + N SY + + + + LI+
Sbjct: 924 SFKFGTYLILQKEVIPMDMYLSLITLSYTSNMAGSAISYMPDFRKAIHSAGLIF 977
>Z81092-1|CAB03144.1| 143|Caenorhabditis elegans Hypothetical
protein F58D12.1 protein.
Length = 143
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 331 ADRPLPKPPLNSTSAEPGPTSA 266
+DRP P+PP +S S+ P P SA
Sbjct: 45 SDRP-PRPPSSSASSSPAPGSA 65
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = +3
Query: 171 GAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFG 317
G VG P AP + + A A P G P A PG A G G
Sbjct: 259 GNVGAPGAPGQVVDVPGAPGPAGPPGPPGPSGAPGHPGQAGSSLPGAPG 307
>Z93374-6|CAB07559.1| 108|Caenorhabditis elegans Hypothetical
protein C06C6.8 protein.
Length = 108
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 150 RTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADV 275
R + V R A RPD T+ + PPA P ++ +V
Sbjct: 39 RVDLVPRNAPVRPDPVKETSAQTCPTAQTPPAKTPMERSGNV 80
>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
protein F02E9.4b protein.
Length = 1507
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 300 IQHQLNQGRHQPSYHEELQLVVRADKLIYLQLFVLEHQACQ 178
IQ +Q +HQ ++L+L +R + I ++ ++HQ Q
Sbjct: 34 IQQSQHQQQHQNQQQQQLELQIRDQERILIEQQRMQHQQQQ 74
>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical
protein F02E9.4a protein.
Length = 1505
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 300 IQHQLNQGRHQPSYHEELQLVVRADKLIYLQLFVLEHQACQ 178
IQ +Q +HQ ++L+L +R + I ++ ++HQ Q
Sbjct: 34 IQQSQHQQQHQNQQQQQLELQIRDQERILIEQQRMQHQQQQ 74
>Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical
protein W04D2.1b protein.
Length = 894
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 178 LAGLMLQHEQLKIDQLIGAHHQLE 249
LA L++ HE +I++L+ AH Q +
Sbjct: 537 LADLVIVHEMREIEELVNAHDQFK 560
>Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical
protein W04D2.1a protein.
Length = 920
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 178 LAGLMLQHEQLKIDQLIGAHHQLE 249
LA L++ HE +I++L+ AH Q +
Sbjct: 563 LADLVIVHEMREIEELVNAHDQFK 586
>Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical
protein W08D2.6 protein.
Length = 358
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 171 GAVGRPDAPARTAEDRSAYRRAPP 242
G+V R PAR A D Y+ APP
Sbjct: 76 GSVFRARRPARGAYDEGDYKEAPP 99
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +3
Query: 126 PATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSAD 293
PA + + + + A G D P+ A + +A AP D A +GP +++
Sbjct: 451 PADVATTAPETSSAQSAAGSYDVPSEPASEVTAPIVESATEAPSDSAAPIGPAASE 506
>Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical
protein DY3.7 protein.
Length = 922
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 195 PARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEF 302
PAR ++ A+ G+PHD A+ PG D F
Sbjct: 416 PARVSQLTLAHEIGHNFGSPHDFPAECQPGLPDGNF 451
>U55857-11|AAA98036.1| 153|Caenorhabditis elegans Hypothetical
protein K08D10.11 protein.
Length = 153
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 331 ADRPLPKPPLNSTSAEPGPTSA 266
+DRP P+PP S S+ P P SA
Sbjct: 45 SDRP-PRPPSLSASSSPAPGSA 65
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 26.2 bits (55), Expect = 7.8
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +3
Query: 171 GAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFG 317
GA G P AP + E A AG P PGSA G G
Sbjct: 216 GAPGNPGAPGQVTETPGTPGPAGAAGPPGPPGPAGNPGSAGASEPGPAG 264
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 26.2 bits (55), Expect = 7.8
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 108 LPPEIVP-ATLKRS-VRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAG--APHDKKADV 275
L P+I P AT RS + V + V P APA ++++A R A PAG A + + V
Sbjct: 323 LTPKIRPIATANRSSILRMNVVKPTVPAP-APADAQQNKAASRPAVPAGGAARNRQPLRV 381
Query: 276 GPGS 287
PG+
Sbjct: 382 NPGT 385
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 26.2 bits (55), Expect = 7.8
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 108 LPPEIVP-ATLKRS-VRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAG--APHDKKADV 275
L P+I P AT RS + V + V P APA ++++A R A PAG A + + V
Sbjct: 323 LTPKIRPIATANRSSILRMNVVKPTVPAP-APADAQQNKAASRPAVPAGGAARNRQPLRV 381
Query: 276 GPGS 287
PG+
Sbjct: 382 NPGT 385
>AF088288-1|AAC98295.1| 826|Caenorhabditis elegans caspase-related
protein 2A protein.
Length = 826
Score = 26.2 bits (55), Expect = 7.8
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = -3
Query: 328 DRPLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASGLPTAPRRTVS 155
D P P+ P + A+PGPT++ S A +A + P P T S
Sbjct: 478 DVPAPQSPPTPSPADPGPTTSSSSLTQDPASNATGFSDVPAPQAPPTPSPADPGPTTS 535
>AF045646-5|AAK29828.1| 225|Caenorhabditis elegans Hypothetical
protein F56B3.3 protein.
Length = 225
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 331 ADRPLPKPPLNSTSAEPGPTSA 266
+DRP P+PP S S+ P P SA
Sbjct: 45 SDRP-PRPPSLSASSSPAPGSA 65
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 26.2 bits (55), Expect = 7.8
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +3
Query: 171 GAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFG 317
GA G P AP + E A AG P PGSA G G
Sbjct: 226 GAPGNPGAPGQVTETPGTPGPAGAAGPPGPPGPAGNPGSAGASEPGPAG 274
>AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein.
Length = 922
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 195 PARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEF 302
PAR ++ A+ G+PHD A+ PG D F
Sbjct: 416 PARVSQLTLAHEIGHNFGSPHDFPAECQPGLPDGNF 451
>AC084197-7|AAM44398.1| 826|Caenorhabditis elegans Caspase protein
2 protein.
Length = 826
Score = 26.2 bits (55), Expect = 7.8
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = -3
Query: 328 DRPLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASGLPTAPRRTVS 155
D P P+ P + A+PGPT++ S A +A + P P T S
Sbjct: 478 DVPAPQSPPTPSPADPGPTTSSSSLTQDPASNATGFSDVPAPQAPPTPSPADPGPTTS 535
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 26.2 bits (55), Expect = 7.8
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 108 LPPEIVP-ATLKRS-VRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAG--APHDKKADV 275
L P+I P AT RS + V + V P APA ++++A R A PAG A + + V
Sbjct: 323 LTPKIRPIATANRSSILRMNVVKPTVPAP-APADAQQNKAASRPAVPAGGAARNRQPLRV 381
Query: 276 GPGS 287
PG+
Sbjct: 382 NPGT 385
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 26.2 bits (55), Expect = 7.8
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 108 LPPEIVP-ATLKRS-VRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAG--APHDKKADV 275
L P+I P AT RS + V + V P APA ++++A R A PAG A + + V
Sbjct: 323 LTPKIRPIATANRSSILRMNVVKPTVPAP-APADAQQNKAASRPAVPAGGAARNRQPLRV 381
Query: 276 GPGS 287
PG+
Sbjct: 382 NPGT 385
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,709,329
Number of Sequences: 27780
Number of extensions: 146821
Number of successful extensions: 638
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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