Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C22
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   4.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 133 VAGTISGGKCRKILRYSIPSFVK 65
           V G  S G C  +LR  +PSFVK
Sbjct: 138 VIGGASRG-CTAVLRCVVPSFVK 159


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 133 VAGTISGGKCRKILRYSIPSFVK 65
           V G  S G C  +LR  +PSFVK
Sbjct: 138 VIGGASRG-CTAVLRCVVPSFVK 159


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 102 LHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAE 212
           L  P    P T+++ +R   +RR     PD    TA+
Sbjct: 156 LPTPVTPTPTTVQQLLRRAQIRRNERRTPDPHDETAK 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,576
Number of Sequences: 438
Number of extensions: 1969
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)