Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C22
(378 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont... 93 6e-20
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont... 86 8e-18
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ... 85 1e-17
At3g49650.1 68416.m05426 kinesin motor protein-related several k... 29 1.0
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin... 28 2.4
At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate nucleotido... 27 4.1
At3g21220.1 68416.m02682 mitogen-activated protein kinase kinase... 27 4.1
At1g16010.1 68414.m01920 magnesium transporter CorA-like family ... 27 4.1
At3g09400.1 68416.m01116 protein phosphatase 2C family protein /... 27 5.5
At2g21380.1 68415.m02544 kinesin motor protein-related 27 5.5
At3g18030.1 68416.m02291 halotolerance protein (HAL3A) identical... 26 7.2
At1g79220.1 68414.m09236 mitochondrial transcription termination... 26 7.2
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 26 7.2
At4g08630.1 68417.m01420 expressed protein ; expression supporte... 26 9.6
>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
contains similarity to 40S ribosomal protein S10
Length = 180
Score = 93.1 bits (221), Expect = 6e-20
Identities = 51/111 (45%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Frame = +3
Query: 12 KSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVG-RP 188
KS+ YV+E FAW H+YW+LTNEGI++LR +L+LP EIVPATLK+ + G G RP
Sbjct: 51 KSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRP 110
Query: 189 DAP-----ARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFGRGR 326
P R DR YR P +G + KA P FRGG G R
Sbjct: 111 RGPPRGDGERRFGDRDGYRGGPKSGGEYGDKAG-APADYQPGFRGGAGGAR 160
>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
contains similarity to 40S ribosomal protein S10
Length = 179
Score = 85.8 bits (203), Expect = 8e-18
Identities = 48/115 (41%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Frame = +3
Query: 12 KSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAV--GR 185
KS+ YV+E FAW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S + G R
Sbjct: 50 KSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDR 109
Query: 186 PDAPARTA------EDRSAYRRAPPAGAPHDKKADVGPGSADVEFRG---GFGRG 323
P DR YR P AG + P F+G GFGRG
Sbjct: 110 SRGPRHEGGDRPRFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQGSGRGFGRG 164
>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
Length = 177
Score = 85.0 bits (201), Expect = 1e-17
Identities = 48/113 (42%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Frame = +3
Query: 12 KSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--------TETVR 167
KS+ YV+E FAW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S + R
Sbjct: 50 KSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDR 109
Query: 168 RGAVGRPDAPARTAEDRSAYRRAPPAG-APHDKKADVGPGSADVEFRGGFGRG 323
+ R D DR YR P G AD P R GFGRG
Sbjct: 110 QRGPPRSDGDRPRFGDRDGYRGGPRGGDEKGGAPADFQPSFQGGGGRPGFGRG 162
>At3g49650.1 68416.m05426 kinesin motor protein-related several
kinesin-like proteins
Length = 813
Score = 29.1 bits (62), Expect = 1.0
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +3
Query: 144 SVRTETVRRGAVGRPDAPARTA-----EDRSAYRRAPPAGAPHDKKADVGPGSADVEFRG 308
S R TVR G+ P APA + + + +P +G K + G S +RG
Sbjct: 737 SPRAVTVRNGSYNTPLAPAAVSTKGARNQQRVFGTSPLSGTKGVKNSSYGQNSHTKLYRG 796
Query: 309 GFGRGRS 329
G +G S
Sbjct: 797 GGTKGHS 803
>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
motor protein - Ustilago maydis, PID:g2062750; identical
to cDNA MKRP2 mRNA for kinesin-related protein
GI:16902293, kinesin-related protein [Arabidopsis
thaliana] GI:16902294
Length = 1055
Score = 27.9 bits (59), Expect = 2.4
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Frame = +1
Query: 85 NTLEF-SCTYLLKLYQQP*RGQCVQRQYVVV----QLAGLMLQHEQLKIDQLIGAHHQLE 249
NTL+F S +++Y R Q + + ++ +++ L L+ +QL+ L+G H+
Sbjct: 404 NTLKFASRAKSIEIYAS--RNQIIDEKSLIKKYQREISTLKLELDQLRRGMLVGVSHEEL 461
Query: 250 LLMIRRLMSALVQLMLNLEEVSE 318
+ + ++L V++ LEE E
Sbjct: 462 MSLKQQLEEGQVKMQSRLEEEEE 484
>At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate
nucleotidohydrolase family contains Pfam profile:
PF00692 deoxyuridine 5'-triphosphate nucleotidohydrolase
Length = 166
Score = 27.1 bits (57), Expect = 4.1
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +3
Query: 135 LKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGF 314
L +V ++ RG P + + + R AP +G DVG G D ++RG
Sbjct: 53 LSSAVDSKVPARGKALIPTDLSIAVPEGTYARIAPRSGLAWKHSIDVGAGVIDADYRGPV 112
Query: 315 G 317
G
Sbjct: 113 G 113
>At3g21220.1 68416.m02682 mitogen-activated protein kinase kinase
(MAPKK), putative (MKK5) identical to GB:BAA28831 from
[Arabidopsis thaliana]; mitogen-activated protein kinase
kinase (MAPKK) family, PMID:12119167
Length = 348
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 322 PLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASG 185
PLP PP +S+S+ P +SA +S + + + +GA G
Sbjct: 38 PLPLPPPSSSSSAPASSSA-ISTNISAAKSLSELERVNRIGSGAGG 82
>At1g16010.1 68414.m01920 magnesium transporter CorA-like family
protein (MRS2-1) low similarity to SP|Q01926 RNA
splicing protein MRS2, mitochondrial precursor
{Saccharomyces cerevisiae}; contains Pfam profile
PF01544: CorA-like Mg2+ transporter protein
Length = 442
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 214 IDQLIGAHHQLELLMIRRLMSALVQLMLNLEEVSEEVD 327
+D+L L L +RRL S LV L +++V +E++
Sbjct: 209 LDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIE 246
>At3g09400.1 68416.m01116 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2c
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 650
Score = 26.6 bits (56), Expect = 5.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -3
Query: 316 PKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASGLPTA 173
P+PPL PG T+ F S LS+++ SG+ +A
Sbjct: 55 PEPPLRPDPI-PGTTTTFRSISGASVSANTSTALSTSLSTDTSGIASA 101
>At2g21380.1 68415.m02544 kinesin motor protein-related
Length = 1058
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 175 QLAGLMLQHEQLKIDQLIGAHHQLELLMIRRLMSALVQLMLNLEEVSE 318
+++ L ++ +QL+ L+G H+ L + ++L V++ LEE E
Sbjct: 443 EISTLKVELDQLRRGVLVGVSHEELLSLKQQLQEGQVKMQSRLEEEEE 490
>At3g18030.1 68416.m02291 halotolerance protein (HAL3A) identical to
GB:AAD51616 from [Arabidopsis thaliana]; similar to
Halotolerance protein Hal3b (SP:P94063)[Arabidopsis
thaliana]; contains Pfam PF02441: Flavoprotein
Length = 209
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 128 SNPEEVSAYRDSTSWCSW 181
S P+EV+ Y D W SW
Sbjct: 64 SLPQEVTLYTDEDEWSSW 81
>At1g79220.1 68414.m09236 mitochondrial transcription termination
factor family protein / mTERF family protein weak
similarity to mtDBP protein [Paracentrotus lividus]
GI:4584695; contains Pfam profile PF02536: mTERF
Length = 399
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 47 PCELFLNISSRFKPR 3
PC L LN+ SR KPR
Sbjct: 310 PCLLLLNLESRLKPR 324
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 334 GADRPLPKPPLNSTSAEPGP 275
GA P P PPL+ T A P P
Sbjct: 712 GAPPPPPPPPLSKTPAPPPP 731
>At4g08630.1 68417.m01420 expressed protein ; expression supported
by MPSS
Length = 845
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +3
Query: 174 AVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFGRG 323
+VG P R A RS + PP PH G +DV++ + G
Sbjct: 241 SVGLPGG--RAARSRSPLTKNPPLRHPHAVAQPPSNGESDVDYDESYTSG 288
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,193,548
Number of Sequences: 28952
Number of extensions: 131270
Number of successful extensions: 453
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -