Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C21
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    29   0.29 
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   2.0  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   3.6  
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    25   4.7  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    25   4.7  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    24   8.2  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    24   8.2  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    24   8.2  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    24   8.2  

>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 29.1 bits (62), Expect = 0.29
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 217 YDRDAINKKDSPDAISSSDTNGDSLSNASKEVKGRTHTFYQVLIDTRD 360
           Y+    + +D+ DA S +   GDS+   SK + G   T+ +  +DT D
Sbjct: 539 YEAFPNDNQDADDACSYN--TGDSIPQVSKSINGHFETYSRTSMDTDD 584


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 245 IVQTLYPLLILTETLYLTPVKKL 313
           ++ T YP+ +L  T YLTP+ ++
Sbjct: 77  LLLTKYPVYVLLSTYYLTPLSQI 99


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -3

Query: 190 SHLYIQILYAILTVLYHIF 134
           +H+ +QI+Y ILT++ +IF
Sbjct: 57  AHIPVQIVYVILTLIGYIF 75


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 290 YLTPVKKLKEEHILSTKFL*TQGMHLTYEPK 382
           YLTP K ++   +L T  +  + +H+   PK
Sbjct: 108 YLTPKKPIRAPDLLETGLIYAKTIHIITNPK 138


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +1

Query: 118 SPKTSGKYDTGQLILHKVFGYRGVILFPWLARVYDRDAIN 237
           SP  S     G   + +VFG  G + F W    Y    +N
Sbjct: 79  SPSPSSISQAGPFAISQVFGPAGRLYFLWAQSTYAGGIVN 118


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 253 DAISSSDTNGDSLSNASKEVKGRTH 327
           D ISS  +NG SLS    +++G  H
Sbjct: 299 DKISSGGSNGFSLSKTLDDLRGIDH 323


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +1

Query: 208 ARVYDRDAINKK----DSPDAISSSDTNGDSLSNASKEVKGRTHTFYQVLIDTRD 360
           A +Y+RDA+N K    D    +  SD     L   ++ ++         L+++RD
Sbjct: 111 AEIYNRDALNTKQEHLDIKKRLEKSDETVCKLKEENENLQDMLRNVGNELVESRD 165


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 235 NKKDSPDAISSSDTNGDSLSNAS 303
           N KD+ D I ++D NG  ++N++
Sbjct: 74  NLKDNQDLIPNNDVNGIHINNSA 96


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 40  LRFNASKLLITQVAHYTRLAEVGKLES 120
           LR   +  + T V HYT    +G LES
Sbjct: 625 LRVAVNGYIETAVIHYTECLSIGNLES 651


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,523,394
Number of Sequences: 5004
Number of extensions: 26985
Number of successful extensions: 82
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)