Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C21
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0941 - 7423284-7423366,7423479-7423749,7423844-7423913,742...    29   1.5  
01_01_0334 - 2698347-2699020,2699321-2699477,2699576-2699647,269...    27   6.0  
08_02_0588 + 19036509-19039235                                         27   8.0  
07_03_1080 + 23815232-23817040                                         27   8.0  

>01_01_0941 -
           7423284-7423366,7423479-7423749,7423844-7423913,
           7424034-7424329,7426097-7426642
          Length = 421

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 109 KLESPKTSGKYDTGQLILHKVFGYRG 186
           KLE PK+  K   G  ++ ++FGYRG
Sbjct: 384 KLELPKSFSKIAFGNGLIRRLFGYRG 409


>01_01_0334 -
           2698347-2699020,2699321-2699477,2699576-2699647,
           2699697-2700641,2701183-2701259,2701908-2702064
          Length = 693

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +1

Query: 118 SPKTSGKYDTGQLILHKVFGYRG--VILFPWLARVYDRDAINKKDSPDAI--SSSDTNGD 285
           S K+SGK   G LIL K++G  G    + P   ++    +I+  +S + +    S +NGD
Sbjct: 86  SKKSSGKGSLGSLILKKLYGKEGHKEKMLPVAPKLLRTLSIHYLESNEYVLDGESASNGD 145

Query: 286 SLSNA 300
             S +
Sbjct: 146 GSSQS 150


>08_02_0588 + 19036509-19039235
          Length = 908

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 384 CLGSYVRCIPCVYKNLVESMCS 319
           CLG +V C+ CV  NLV  +CS
Sbjct: 164 CLG-FVECLGCVTVNLVLFVCS 184


>07_03_1080 + 23815232-23817040
          Length = 602

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +1

Query: 193 LFPWLARVYDRDAINKKDSPDAISSSDTNGDSLSNASKEVKGRTHTFYQVLIDTRDAPYI 372
           L P +  V + +A      PDA S+++  GD+   A  +V G    F+   +D+ +  + 
Sbjct: 440 LDPRVVTVVEEEADLVASDPDASSATEEGGDT-EAAFLKVFGEGLRFFSAYMDSLEESFP 498

Query: 373 RAQTEAVTL 399
           +   E + L
Sbjct: 499 KTSNERLAL 507


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.133    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,981,172
Number of Sequences: 37544
Number of extensions: 146344
Number of successful extensions: 422
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)