Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C21
(417 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10537| Best HMM Match : CTP_transf_2 (HMM E-Value=0) 126 6e-30
SB_32193| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.22
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_53035| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_2250| Best HMM Match : MgtE_N (HMM E-Value=8.4) 28 2.7
SB_37584| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.7
SB_5952| Best HMM Match : zf-RanBP (HMM E-Value=0.76) 27 4.7
SB_20506| Best HMM Match : Lig_chan (HMM E-Value=2.7) 27 4.7
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 27 6.2
SB_59024| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-19) 27 6.2
>SB_10537| Best HMM Match : CTP_transf_2 (HMM E-Value=0)
Length = 816
Score = 126 bits (305), Expect = 6e-30
Identities = 59/108 (54%), Positives = 76/108 (70%)
Frame = +1
Query: 88 TRLAEVGKLESPKTSGKYDTGQLILHKVFGYRGVILFPWLARVYDRDAINKKDSPDAISS 267
+RL+E+G+ + PKT GKY+ GQL LHK+FGYRGV+LFPW+ARVYDRD K D +
Sbjct: 404 SRLSEIGRFQVPKTQGKYEGGQLFLHKIFGYRGVVLFPWVARVYDRDREAKDDEK---NF 460
Query: 268 SDTNGDSLSNASKEVKGRTHTFYQVLIDTRDAPYIRAQTEAVTLLGNQ 411
D +G +N KE+K T+YQ LIDTRD+P+IR Q E VT LG +
Sbjct: 461 EDNSG--FNNIGKELKADLQTYYQTLIDTRDSPFIRTQPEIVTFLGQE 506
>SB_32193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 31.9 bits (69), Expect = 0.22
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 82 HYTRLAEVGKLESPKTSG-KYDTGQLILHKVFGYRGVIL 195
H+ AEV SP+ S KY GQ+I HK++ YR VI+
Sbjct: 137 HFGMSAEV---RSPRPSNVKYRVGQVIRHKLWNYRAVIV 172
>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = +1
Query: 223 RDAINKKDSPDAISSSDTNGDSLSN 297
RD +N +D+ DA++++DT DS++N
Sbjct: 304 RDPVNNRDTQDAVNNTDTR-DSINN 327
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 223 RDAINKKDSPDAISSSDTNGDSLSNASKEVKGRTHT 330
RD+IN +D+ D +++DT + + E + T T
Sbjct: 322 RDSINNRDTRDTDNNNDTRXXXXTTETPETQSTTTT 357
>SB_53035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 432
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 346 IDTRDAPYIRAQTEAVTLLGN 408
+DT + PYI+A EA LLGN
Sbjct: 66 VDTLECPYIQATVEADGLLGN 86
>SB_2250| Best HMM Match : MgtE_N (HMM E-Value=8.4)
Length = 232
Score = 28.3 bits (60), Expect = 2.7
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 194 CSHGWQEFTTETRSTRKIVQTLYPL--LILTETLYLTPVKKLKEEHILSTKFL*TQGMHL 367
CS G++E + + K+ + Y + LT LYL KL L + T+ ++L
Sbjct: 85 CSEGFKEINSISIKLAKLTRVSYLVDRAKLTRILYLVDRAKLTRVLYLVDRAKLTRVLYL 144
Query: 368 TYEPKQKRSLYLV 406
K R LYLV
Sbjct: 145 VDRAKLTRVLYLV 157
>SB_37584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 27.5 bits (58), Expect = 4.7
Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 3/33 (9%)
Frame = -3
Query: 190 SHLYIQILYAI---LTVLYHIFLMSLVIQVFQL 101
SH++ +LYA+ LTVL +IF++ LVI+ +L
Sbjct: 55 SHVFRLVLYAVIFSLTVLGNIFVIVLVIKTREL 87
>SB_5952| Best HMM Match : zf-RanBP (HMM E-Value=0.76)
Length = 154
Score = 27.5 bits (58), Expect = 4.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 217 YDRDAINKKDSPDAISSSDTNGDS-LSNASKEVKGRTHT 330
YD D I D + + + DTN DS + NA E +T T
Sbjct: 13 YDEDEIGALDHEEVLGTVDTNADSHIINAITEEFEQTRT 51
>SB_20506| Best HMM Match : Lig_chan (HMM E-Value=2.7)
Length = 570
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 262 SSSDTNGDSLSNASKEVKGRTHTFYQVLIDTRDAPYIRAQTEAVTLL 402
SS D G+S N +G T + +L+D +A + TEA LL
Sbjct: 229 SSEDKTGESTMNREIVRQGATLLYCDLLMDKEEAHPGSSMTEAAVLL 275
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 27.1 bits (57), Expect = 6.2
Identities = 8/26 (30%), Positives = 19/26 (73%)
Frame = -3
Query: 193 ISHLYIQILYAILTVLYHIFLMSLVI 116
++H +++ +A+L+V + +FLMS +
Sbjct: 297 VTHAVLRVAHAVLSVAHEVFLMSCCV 322
>SB_59024| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-19)
Length = 423
Score = 27.1 bits (57), Expect = 6.2
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +2
Query: 191 YCSHGWQEFTTETRSTRKIVQTLYPL-----LILTETLYLTPVKKLKEEHILSTK 340
YC WQ +T R+ R + L L+L LY ++KL+E + + K
Sbjct: 251 YCILDWQPYTDSMRAQRPFYMCQFVLLYAAPLLLIAFLYACVIRKLREGALATHK 305
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.133 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,814,206
Number of Sequences: 59808
Number of extensions: 179935
Number of successful extensions: 627
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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