Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C21
         (417 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009265-1|AAH09265.1|  368|Homo sapiens polymerase (DNA-directe...   121   8e-28
BC000655-1|AAH00655.1|  368|Homo sapiens polymerase (DNA-directe...   121   8e-28
AF179891-1|AAK92018.1|  368|Homo sapiens putative DNA polymerase...   121   8e-28

>BC009265-1|AAH09265.1|  368|Homo sapiens polymerase (DNA-directed),
           delta interacting protein 2 protein.
          Length = 368

 Score =  121 bits (292), Expect = 8e-28
 Identities = 61/109 (55%), Positives = 76/109 (69%), Gaps = 2/109 (1%)
 Frame = +1

Query: 94  LAEVGKLESPKTSGKYDTGQLILHKVFGYRGVILFPWLARVYDRDAINKKDSPDAISSSD 273
           L  VG  E PK +GKY+TGQL LH +FGYRGV+LFPW AR+YDRD  +   +P+   +  
Sbjct: 62  LETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASA--APEKAENPA 119

Query: 274 TNGDSLSNASKEVKGRTHTFYQVLIDTRDAPYI--RAQTEAVTLLGNQE 414
            +G      SKEVKG+THT+YQVLID RD P+I  R+QTEAVT L N +
Sbjct: 120 GHG------SKEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHD 162


>BC000655-1|AAH00655.1|  368|Homo sapiens polymerase (DNA-directed),
           delta interacting protein 2 protein.
          Length = 368

 Score =  121 bits (292), Expect = 8e-28
 Identities = 61/109 (55%), Positives = 76/109 (69%), Gaps = 2/109 (1%)
 Frame = +1

Query: 94  LAEVGKLESPKTSGKYDTGQLILHKVFGYRGVILFPWLARVYDRDAINKKDSPDAISSSD 273
           L  VG  E PK +GKY+TGQL LH +FGYRGV+LFPW AR+YDRD  +   +P+   +  
Sbjct: 62  LETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASA--APEKAENPA 119

Query: 274 TNGDSLSNASKEVKGRTHTFYQVLIDTRDAPYI--RAQTEAVTLLGNQE 414
            +G      SKEVKG+THT+YQVLID RD P+I  R+QTEAVT L N +
Sbjct: 120 GHG------SKEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHD 162


>AF179891-1|AAK92018.1|  368|Homo sapiens putative DNA polymerase
           delta p38 subunit protein.
          Length = 368

 Score =  121 bits (292), Expect = 8e-28
 Identities = 61/109 (55%), Positives = 76/109 (69%), Gaps = 2/109 (1%)
 Frame = +1

Query: 94  LAEVGKLESPKTSGKYDTGQLILHKVFGYRGVILFPWLARVYDRDAINKKDSPDAISSSD 273
           L  VG  E PK +GKY+TGQL LH +FGYRGV+LFPW AR+YDRD  +   +P+   +  
Sbjct: 62  LETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASA--APEKAENPA 119

Query: 274 TNGDSLSNASKEVKGRTHTFYQVLIDTRDAPYI--RAQTEAVTLLGNQE 414
            +G      SKEVKG+THT+YQVLID RD P+I  R+QTEAVT L N +
Sbjct: 120 GHG------SKEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHD 162


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.316    0.133    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,856,977
Number of Sequences: 237096
Number of extensions: 831742
Number of successful extensions: 1671
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1665
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3144905170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)