Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C21
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-6|AAK93870.2|  342|Caenorhabditis elegans Temporarily ass...    40   5e-04
U97403-6|AAB52471.2|  583|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U40934-2|AAA81680.2|  158|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AF068708-3|AAC17754.1|  253|Caenorhabditis elegans Histone h1 li...    28   3.1  
AF005371-1|AAB81029.1|  253|Caenorhabditis elegans histone H1.4 ...    28   3.1  
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL021171-4|CAA15959.1|  409|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z81544-8|CAB04433.3|  399|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U39999-5|AAA81106.1|  263|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>L14429-6|AAK93870.2|  342|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 307 protein.
          Length = 342

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
 Frame = +1

Query: 46  FNASKLLITQVAHYTR--LAEVGKLESPKTSGKYDTGQLILHKVFGYRGVILFPWLARVY 219
           F+A K+L+++    T   L E+G L        ++ GQ+ +HK F Y+GV++  +  R++
Sbjct: 22  FSAGKVLLSRFRSATTPILKEIGLLLPSTNKPTFEAGQIFIHKTFAYKGVVVCSFPCRLH 81

Query: 220 DR 225
           ++
Sbjct: 82  EK 83


>U97403-6|AAB52471.2|  583|Caenorhabditis elegans Hypothetical
           protein T10E9.3 protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 199 PWLARVYDRDAINKKDSPDAISSSDTNGDSLSNASKEV 312
           P  A V D   +   D+P +++SS ++  SLS A  ++
Sbjct: 416 PHTAEVADEHPLTGVDAPSSVTSSSSSSSSLSTAGPQL 453


>U40934-2|AAA81680.2|  158|Caenorhabditis elegans Hypothetical
           protein F35H10.6 protein.
          Length = 158

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
 Frame = +1

Query: 115 ESPKTS-GKYDTGQLILH--KVFGYRGVILFPWLARVYDRDAINKKDSPDAISSSDTNGD 285
           E+PKT+ GK + GQ +    +V   + V++     ++ D D   +    DAI + D   D
Sbjct: 57  EAPKTTEGKTELGQRVFMNIEVRDTKHVVV-----KLCD-DVYVEMKLQDAIKTCDRKMD 110

Query: 286 SLSNASKEVKGRTH---TFYQVLIDTRDAPYI 372
           SL N  ++++  T+   T   +L+ T D PY+
Sbjct: 111 SLKNMMEKLQKSTNKLKTDLTMLLATMDMPYV 142


>AF068708-3|AAC17754.1|  253|Caenorhabditis elegans Histone h1 like
           protein 4 protein.
          Length = 253

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 262 SSSDTNGDSLSNASKEVKGRTHTFYQVLIDTRDAPYIRAQTEAVTLLGNQE 414
           +S  T     + ASK  K +T     V  D    P+I   TEA++ + +++
Sbjct: 20  ASKATKASKATKASKATKAKTTKVPMVKADAAHPPFINMVTEAISSIKDRK 70


>AF005371-1|AAB81029.1|  253|Caenorhabditis elegans histone H1.4
           protein.
          Length = 253

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 262 SSSDTNGDSLSNASKEVKGRTHTFYQVLIDTRDAPYIRAQTEAVTLLGNQE 414
           +S  T     + ASK  K +T     V  D    P+I   TEA++ + +++
Sbjct: 20  ASKATKASKATKASKATKAKTTKVPMVKADAAHPPFINMVTEAISSIKDRK 70


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
            D2045.2 protein.
          Length = 1792

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 202  WLARVYDRDAINKKDSPDAISSSDTNGDSLSNASKEVK 315
            WLA+  D + + K       + SD N D LSN  KE++
Sbjct: 1615 WLAKKIDEN-VTKLIGARNDADSDDNMDGLSNLEKEIR 1651


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
            C23F12.1a protein.
          Length = 2329

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = +1

Query: 124  KTSGKYDTG----QLILHKVFGYRGVI---LFPWLARVYDRDAINKKDSPDAISSSDT 276
            K+S KY+      ++  HKVF Y   +   L P+  RVYD   I   + P+  + +DT
Sbjct: 953  KSSSKYEISFKPTEVGTHKVFAYVNDMQHPLSPFAVRVYDASEIIVGEIPNQSNLNDT 1010


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = +1

Query: 124  KTSGKYDTG----QLILHKVFGYRGVI---LFPWLARVYDRDAINKKDSPDAISSSDT 276
            K+S KY+      ++  HKVF Y   +   L P+  RVYD   I   + P+  + +DT
Sbjct: 953  KSSSKYEISFKPTEVGTHKVFAYVNDMQHPLSPFAVRVYDASEIIVGEIPNQSNLNDT 1010


>AL021171-4|CAA15959.1|  409|Caenorhabditis elegans Hypothetical
           protein H04D03.3 protein.
          Length = 409

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 202 WLARVYDRDAINKKDSPDAISSSDTNGDSLSNASKEVK 315
           WLA+  D + + K       + SD N D LSN  KE++
Sbjct: 232 WLAKKIDEN-VTKLIGARNDADSDDNMDGLSNLEKEIR 268


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
           protein C08G9.2 protein.
          Length = 2224

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 194 NITPLYPNTLCNINCPVSYFPDV 126
           N+ P  P T CN+ CP  Y  D+
Sbjct: 26  NVCPFRP-TSCNLLCPFGYLKDI 47


>Z81544-8|CAB04433.3|  399|Caenorhabditis elegans Hypothetical
           protein F49C5.4 protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 238 KKDSPDAISSSDTNGD--SLSNASKEVKGRTHT 330
           +KD P   SSS TNG   S+ + ++++K R+ T
Sbjct: 363 EKDEPQPSSSSFTNGSPTSVKDVNRKLKNRSKT 395


>U39999-5|AAA81106.1|  263|Caenorhabditis elegans Hypothetical
           protein F41G3.5 protein.
          Length = 263

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 169 VFGYRGVILFPWLARVYDRDAINKKD 246
           V G+RG + +  LA  Y RD+  K+D
Sbjct: 123 VHGFRGTVRYAPLATHYGRDSCRKED 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.133    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,160,757
Number of Sequences: 27780
Number of extensions: 144071
Number of successful extensions: 452
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)