Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C21
         (417 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger ...    35   0.025
At2g03390.1 68415.m00298 uvrB/uvrC motif-containing protein cont...    31   0.31 
At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing...    29   0.95 
At4g04130.1 68417.m00583 Ulp1 protease family protein contains P...    28   2.9  
At3g56100.1 68416.m06235 leucine-rich repeat transmembrane prote...    27   5.1  
At1g35940.1 68414.m04463 AT hook motif-containing protein-relate...    27   5.1  
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina...    27   6.7  
At1g52570.1 68414.m05935 phospholipase D alpha 2 / PLD alpha 2 (...    27   6.7  

>At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger
           (CCCH-type) family protein contains Pfam domain,
           PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
           similar), PF04677: Protein similar to CwfJ C-terminus 1,
           PF04676: Protein similar to CwfJ C-terminus 2
          Length = 593

 Score = 34.7 bits (76), Expect = 0.025
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
 Frame = +1

Query: 106 GKLESPKTSGKYDTGQLILHKVFGYR--GVILFPWLARVYDRDAINKKDSPDAISSSDTN 279
           G+  S    GKY    +   +       G I   W A V +R A++  D P  IS S  +
Sbjct: 124 GRQSSESQFGKYSQDDVDALRALAEEPGGCITNEWPAGVTNRAAVS--DIPVGISDSSCS 181

Query: 280 GDSLSNASKEVKGRTHTFYQVLIDTRDAPYIRAQTEAVT 396
             ++S    EVK R H    + +     PY+ A++  VT
Sbjct: 182 DSTVSELVMEVKPRYHIAGSMGVFYAREPYLNAESTHVT 220


>At2g03390.1 68415.m00298 uvrB/uvrC motif-containing protein
           contains Pfam profile PF02151: UvrB/uvrC motif
          Length = 330

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 23/81 (28%), Positives = 31/81 (38%)
 Frame = +1

Query: 124 KTSGKYDTGQLILHKVFGYRGVILFPWLARVYDRDAINKKDSPDAISSSDTNGDSLSNAS 303
           K    +  GQ + HK FGYR V+                    D I S  ++    +   
Sbjct: 201 KAEYAFRLGQKLRHKTFGYRAVVC-----------------GMDPICSESSSWMEAAEVE 243

Query: 304 KEVKGRTHTFYQVLIDTRDAP 366
           K  +G    FYQVL+D R  P
Sbjct: 244 KLPRGSNQPFYQVLVDVRTHP 264


>At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing
           protein / RanBP1 domain-containing protein similar to
           Ran binding protein [Homo sapiens] GI:624232; contains
           Pfam profile PF00638: RanBP1 domain
          Length = 465

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 220 DRDAINKKDSPDAISSSDTNGDSLSNASKEV 312
           D D+  K D+ DA+   +T GD +S  +K++
Sbjct: 118 DGDSKEKSDAIDAVGKQETQGDEISAKTKDI 148


>At4g04130.1 68417.m00583 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At2g11345,  At3g42690
          Length = 1200

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 13  MLKLVPVNSLRFNASKLLITQVAHYTRLAEVGKLESPKTSGK 138
           ++K  P+ +LR+N SK L+  +         G  E+PK+  K
Sbjct: 534 LIKQAPLLNLRYNISKDLLKNLKEKATETAAGAPETPKSKSK 575


>At3g56100.1 68416.m06235 leucine-rich repeat transmembrane protein
           kinase, putative hypothetical proteins - Arabidopsis
           thaliana
          Length = 719

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
 Frame = +1

Query: 55  SKLLITQVAHYTRLAEVGKLESPKT-SGKYDTGQLILHKVFG------YRGVILFPWLAR 213
           S ++ T  A   R  E+ KL+   T +  Y  G +IL  + G        GV L  W+A 
Sbjct: 578 SSVIATAGALGYRAPELSKLKKANTKTDVYSLGVIILELLTGKSPSEALNGVDLPQWVAT 637

Query: 214 VYDRDAINKKDSPDAISSSDTNGDSLSNASK 306
               +  N+    + ++  +T GD + N  K
Sbjct: 638 AVKEEWTNEVFDLELLNDVNTMGDEILNTLK 668


>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
           very low similarity to SP|Q9UUA2 DNA repair and
           recombination protein pif1, mitochondrial precursor
           {Schizosaccharomyces pombe}; contains weak hit to
           PF02178: AT hook motif
          Length = 1678

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +1

Query: 196 FPWLARVYDRDAINKKDSPDAISS-SDTNGDSLSN--ASKEVKGRT-HTFYQVLIDTRDA 363
           +P + R YD+  +N +D P+ I+       DSL N    K++ G+T  + Y V    R  
Sbjct: 739 WPEITRYYDKRGLNPEDRPNIIARIFKIKLDSLMNDLTVKKMLGKTVASMYTVEFQKRGL 798

Query: 364 PY 369
           P+
Sbjct: 799 PH 800


>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
           family protein low similarity to phosphatidylinositol
           3,5-kinase [Candida albicans] GI:14571648; contains Pfam
           profile PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase
          Length = 1648

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 211 RVYDRDAINKKDSPDAISSSDTNGDSLSNA 300
           RV   D ++ +DSPD  SS  T  +SL+++
Sbjct: 93  RVKSYDKVHPRDSPDPPSSLATESESLASS 122


>At1g52570.1 68414.m05935 phospholipase D alpha 2 / PLD alpha 2
           (PLDALPHA2) (PLD2) / choline phosphatase 2 identical to
           phospholipase D alpha 2 ( PLD alpha 2) SP:Q9SSQ9 from
           [Arabidopsis thaliana]
          Length = 810

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +1

Query: 49  NASKLL-ITQVAHYTRLAEVGKLESPKTSGKYDTGQLILHKVFGYRGVILFPWLARVYDR 225
           NA  L+ IT  + YT ++ V     PK  G    G+L+  K      VIL  W     DR
Sbjct: 221 NAKHLIYITGWSVYTEISLVRDSRRPKQGGDVTVGELLKKKASEGVKVILLVW----DDR 276

Query: 226 DAIN--KKDSPDAISSSDT 276
            +++  KKD   A    +T
Sbjct: 277 TSVDLLKKDGLMATHDEET 295


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.133    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,638,251
Number of Sequences: 28952
Number of extensions: 130607
Number of successful extensions: 399
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)