Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C19
(348 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111; Eukar... 141 3e-33
UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S riboso... 126 1e-28
UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2; Basidio... 125 2e-28
UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27; Viri... 116 8e-26
UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26; Fungi/... 108 2e-23
UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=... 105 3e-22
UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9; Oligohy... 104 5e-22
UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=... 103 1e-21
UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5; Ascomyc... 103 1e-21
UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6; Trichom... 101 3e-21
UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=... 100 6e-21
UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoe... 88 3e-17
UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n... 85 3e-16
UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n... 82 3e-15
UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillar... 74 8e-13
UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1; Encepha... 73 2e-12
UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1; ... 59 2e-08
UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal ... 53 1e-06
UniRef50_A3DKW5 Cluster: 50S ribosomal protein L13e; n=1; Staphy... 43 0.002
UniRef50_Q8ZWS7 Cluster: 60S ribosomal protein L13; n=4; Pyrobac... 41 0.005
UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1; Arabido... 39 0.021
UniRef50_Q9YEN9 Cluster: 50S ribosomal protein L13e; n=3; Desulf... 39 0.021
UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza s... 39 0.027
UniRef50_A3H6W8 Cluster: Ribosomal protein L13; n=1; Caldivirga ... 39 0.027
UniRef50_P58469 Cluster: 50S ribosomal protein L13e; n=1; Sulfol... 39 0.027
UniRef50_Q97W05 Cluster: 50S ribosomal protein L13e; n=2; Sulfol... 38 0.036
UniRef50_A1RY56 Cluster: 60S ribosomal protein L13; n=1; Thermof... 36 0.15
UniRef50_UPI00015BAF4C Cluster: LSU ribosomal protein L13E; n=1;... 35 0.44
UniRef50_A4SXJ1 Cluster: Polar amino acid ABC transporter, inner... 33 1.8
UniRef50_UPI000023D9FA Cluster: hypothetical protein FG09640.1; ... 32 3.1
UniRef50_Q83XP1 Cluster: Putative beta-lactam synthetase; n=1; S... 32 3.1
UniRef50_A1ZIW8 Cluster: Putative uncharacterized protein; n=1; ... 30 9.5
UniRef50_A5BJQ2 Cluster: Putative uncharacterized protein; n=2; ... 30 9.5
>UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111;
Eukaryota|Rep: 60S ribosomal protein L13 - Homo sapiens
(Human)
Length = 211
Score = 141 bits (341), Expect = 3e-33
Identities = 64/105 (60%), Positives = 76/105 (72%)
Frame = +1
Query: 28 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVR 207
N M+ HFHKDWQR V TWFNQPAR+ RR++ R +RP+VRCPTVR
Sbjct: 6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65
Query: 208 YHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESL 342
YHTKVRAGRGF+L E+R +G++ ARTIGI+VDPRRRNKS ESL
Sbjct: 66 YHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESL 110
>UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S ribosomal
protein L13; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to 60S ribosomal protein L13 - Tribolium
castaneum
Length = 198
Score = 126 bits (304), Expect = 1e-28
Identities = 57/109 (52%), Positives = 75/109 (68%)
Frame = +1
Query: 16 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 195
M + NNMIPNGHFHK WQ+ VK WFNQP ++ RRK R LRP+V C
Sbjct: 1 MVRHNNMIPNGHFHKKWQQKVKLWFNQPMKKLRRKALRAKKSRQLAPKPTEL-LRPLVHC 59
Query: 196 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESL 342
P+ RY +KVRAGRGFT +E++ +G++ +AR+ G+AVDPRRRN+ ES+
Sbjct: 60 PSERYKSKVRAGRGFTFQELKQAGMSDKYARSFGVAVDPRRRNRCTESI 108
>UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2;
Basidiomycota|Rep: 60S ribosomal protein L13 - Ustilago
maydis (Smut fungus)
Length = 209
Score = 125 bits (301), Expect = 2e-28
Identities = 57/109 (52%), Positives = 74/109 (67%)
Frame = +1
Query: 22 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 201
K NN++ N HF KDWQR VK WF+QP + RR+ R LRP VRCPT
Sbjct: 4 KHNNILHNNHFRKDWQRRVKVWFDQPGAKKRRRTAR-EAKAAKLGLRPVQLLRPAVRCPT 62
Query: 202 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLPI 348
+RY+TK+R+GRGFT+ E++A+GL +AR++GI VD RRRNKS ESL +
Sbjct: 63 LRYNTKIRSGRGFTIEEVKAAGLGKKYARSVGIPVDHRRRNKSEESLKL 111
>UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27;
Viridiplantae|Rep: 60S ribosomal protein L13-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 206
Score = 116 bits (280), Expect = 8e-26
Identities = 54/107 (50%), Positives = 71/107 (66%)
Frame = +1
Query: 22 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 201
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 202 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESL 342
++Y+ KVRAG+GFTL E++ +G+ A TIGI+VD RR+N+S+E L
Sbjct: 62 LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGL 108
>UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26;
Fungi/Metazoa group|Rep: 60S ribosomal protein L13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 243
Score = 108 bits (260), Expect = 2e-23
Identities = 52/97 (53%), Positives = 66/97 (68%)
Frame = +1
Query: 52 FHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAG 231
FHKDWQR V+ F+QP R+HRR++ R+ LRPVVRCPTV+Y+ +VR G
Sbjct: 31 FHKDWQRRVRVHFDQPGRKHRRREARLAKAAAVAPRPVDK-LRPVVRCPTVKYNRRVRVG 89
Query: 232 RGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESL 342
RGFTL E++ +G+ ART+GIAVD RR N S ESL
Sbjct: 90 RGFTLAELKEAGIPKKLARTVGIAVDHRRVNYSKESL 126
>UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=7;
Trypanosomatidae|Rep: 60S ribosomal protein L13,
putative - Trypanosoma brucei
Length = 229
Score = 105 bits (251), Expect = 3e-22
Identities = 56/117 (47%), Positives = 72/117 (61%), Gaps = 6/117 (5%)
Frame = +1
Query: 16 MGKGNNMIPNGHFHKDWQRF------VKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXL 177
M KGNN IP+ H K W VK +FNQPA++ RR++ R+ L
Sbjct: 12 MPKGNNAIPHVHQRKHWNPCSSQKGNVKVFFNQPAQKQRRRRLRLLKAKKIFPRPLKA-L 70
Query: 178 RPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLPI 348
RP V CPTVRY+ K R GRGF+L E++A+G+ P +ARTIGI VD RR+NKS E + I
Sbjct: 71 RPQVNCPTVRYNMKRRLGRGFSLEELKAAGVKPRYARTIGIRVDRRRKNKSEEGMNI 127
>UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9;
Oligohymenophorea|Rep: 60S ribosomal protein L13 -
Paramecium tetraurelia
Length = 208
Score = 104 bits (249), Expect = 5e-22
Identities = 51/107 (47%), Positives = 69/107 (64%)
Frame = +1
Query: 22 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 201
K N +PN H K W RFVKT++NQPA + RR+Q R LRPVVR T
Sbjct: 2 KHNQQLPNAHMRKHWTRFVKTFYNQPAAK-RRRQLRRRAQALSASPRPVELLRPVVRGQT 60
Query: 202 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESL 342
++Y++ + GRGF+L E++ +GLN +FART+GI+VD RRRN + E L
Sbjct: 61 IKYNSVQKLGRGFSLIELKEAGLNAAFARTVGISVDHRRRNLNQEEL 107
>UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L13, putative
- Cryptosporidium parvum Iowa II
Length = 207
Score = 103 bits (246), Expect = 1e-21
Identities = 50/107 (46%), Positives = 67/107 (62%)
Frame = +1
Query: 28 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVR 207
NN+IPN H+HK+++R++KTW+NQP R+ R+ R LRP+V PT R
Sbjct: 4 NNVIPNVHYHKNYKRWIKTWYNQPGRKQSRRIAR-QKAVAEAGFRPVGMLRPIVHPPTQR 62
Query: 208 YHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLPI 348
Y+ K R GRGFTL E+ A G+N A +IGIAVD RR + S E+ I
Sbjct: 63 YNMKTRLGRGFTLEELSACGINKKAAMSIGIAVDHRRTDLSEETFQI 109
>UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5;
Ascomycota|Rep: 60S ribosomal protein L13 - Candida
albicans (Yeast)
Length = 202
Score = 103 bits (246), Expect = 1e-21
Identities = 50/99 (50%), Positives = 66/99 (66%)
Frame = +1
Query: 43 NGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKV 222
N HF K WQ V+ F+Q ++ R+Q+R+ LRPVVR PTV+Y+ KV
Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKV 69
Query: 223 RAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVES 339
RAGRGFTL E++A G+ P +ARTIGI+VD RR+NKS E+
Sbjct: 70 RAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQET 108
>UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L13
- Trichomonas vaginalis G3
Length = 210
Score = 101 bits (243), Expect = 3e-21
Identities = 49/97 (50%), Positives = 59/97 (60%)
Frame = +1
Query: 28 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVR 207
NN IPN H K W VKT+F+ PAR RR+ R LRP+VRCPTVR
Sbjct: 26 NNQIPNDHLRKYWYHRVKTYFDDPARAQRRRNARNLRAKKIAPRPAEGPLRPIVRCPTVR 85
Query: 208 YHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRR 318
Y+ K R GRGFT +E+ A+G +P+ AR GIAVD RR
Sbjct: 86 YNMKTRLGRGFTPKELVAAGFDPALARFQGIAVDARR 122
>UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=5;
Plasmodium|Rep: 60S ribosomal protein L13, putative -
Plasmodium chabaudi
Length = 215
Score = 100 bits (240), Expect = 6e-21
Identities = 51/105 (48%), Positives = 65/105 (61%)
Frame = +1
Query: 28 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVR 207
NN++PN H HK WQR+V+ FN+ +R +R+ R L PVV CPT R
Sbjct: 5 NNVLPNVHLHKWWQRYVRVDFNKNIKRKQRRLLR-EKRRKQNGGTPIEKLHPVVHCPTQR 63
Query: 208 YHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESL 342
Y+ K R G+GFTL EI+A L PS AR+IGI VD RR+N+ ESL
Sbjct: 64 YNYKTRLGKGFTLEEIKAVKLTPSAARSIGIIVDKRRKNRCEESL 108
>UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoeba
histolytica|Rep: 60S ribosomal protein L13 - Entamoeba
histolytica
Length = 138
Score = 88.2 bits (209), Expect = 3e-17
Identities = 44/97 (45%), Positives = 59/97 (60%)
Frame = +1
Query: 52 FHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAG 231
F KDW+ V TW QP R+ RR Q R+ L+P V C R++ K+R G
Sbjct: 12 FGKDWRSKVHTWVQQPFRKIRRHQTRVEKAKSVFPATIKS-LKPSVHCMNQRFNYKLRLG 70
Query: 232 RGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESL 342
RGF+L+E+RA+ ++ + ARTIGIAVDPRR+ S E L
Sbjct: 71 RGFSLKELRAAKIDKNLARTIGIAVDPRRKESSKECL 107
>UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n=4;
Piroplasmida|Rep: 60S ribosomal protein L13e, putative -
Theileria parva
Length = 205
Score = 85.0 bits (201), Expect = 3e-16
Identities = 47/109 (43%), Positives = 63/109 (57%)
Frame = +1
Query: 16 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 195
M K NNM+ + H K RFVK NQ ++ RR+ R LRP+V
Sbjct: 1 MVKHNNMLSDVHRVKCSHRFVKPVLNQAGKKKRRRLAR-QRKAAASGLTPTGYLRPLVHM 59
Query: 196 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESL 342
P+ RY+ K+R GRGFTL+E++ +GL AR++G+AVD RR NK ESL
Sbjct: 60 PSRRYNYKLRFGRGFTLQELKVAGLGKKVARSVGVAVDHRRTNKCAESL 108
>UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC2213 UniRef100 entry -
Rattus norvegicus
Length = 173
Score = 81.8 bits (193), Expect = 3e-15
Identities = 34/54 (62%), Positives = 44/54 (81%)
Frame = +1
Query: 175 LRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVE 336
+RP+VRCPTVRYHTKVR GRGF+L EIR +G++ ARTI I+VDP+++ K E
Sbjct: 13 IRPIVRCPTVRYHTKVRGGRGFSLEEIRLAGIHKKMARTIDISVDPKKKKKKKE 66
>UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillardia
theta|Rep: 60S ribosomal protein L13 - Guillardia theta
(Cryptomonas phi)
Length = 127
Score = 73.7 bits (173), Expect = 8e-13
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Frame = +1
Query: 46 GHFHKDWQRFVKTWFNQPARR-HRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKV 222
GHF K W+ V T FNQP + RRK + L+P+V+CPT ++TK+
Sbjct: 10 GHFRKKWKNLVITNFNQPILKIKRRKIRKNKKKNFLKKAIFYKKLKPLVKCPTRMHNTKI 69
Query: 223 RAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSV 333
+ GRGF+++EI+ S + A + GI++D RR+ ++
Sbjct: 70 KLGRGFSIQEIKKSMIKLKTATSYGISIDKRRKKSNI 106
>UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13
- Encephalitozoon cuniculi
Length = 163
Score = 72.5 bits (170), Expect = 2e-12
Identities = 39/106 (36%), Positives = 55/106 (51%)
Frame = +1
Query: 22 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 201
KGN+ +PN HF K + + P + R + LRP+VRCPT
Sbjct: 2 KGNHALPNNHFRKTSLKI--RIHHDPETKARVMAEKKLRKAKALFPMPLKKLRPIVRCPT 59
Query: 202 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVES 339
++Y+ R GRGFT E +GL+ AR +GIAVD RRR+ + E+
Sbjct: 60 IKYNRNERLGRGFTAAECEKAGLDYRHARRLGIAVDLRRRDTNQEA 105
>UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 70
Score = 58.8 bits (136), Expect = 2e-08
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +1
Query: 37 IPNGHFHKDWQRFVKTWFNQPARRHRRK 120
+PN HFHKDWQR+VKTWFNQP R+ RR+
Sbjct: 12 LPNAHFHKDWQRYVKTWFNQPGRKLRRQ 39
>UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal
protein L13 isoform 4; n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to ribosomal protein L13 isoform 4 -
Canis familiaris
Length = 102
Score = 53.2 bits (122), Expect = 1e-06
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = +1
Query: 28 NNMIPNGHFHKDWQRFVKTWFNQPARRHRR 117
N MI HFHKDWQR V TWFNQPAR+ RR
Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRR 35
>UniRef50_A3DKW5 Cluster: 50S ribosomal protein L13e; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein
L13e - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 86
Score = 42.7 bits (96), Expect = 0.002
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +1
Query: 181 PVVRCPTVRYH----TKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRR 321
P+VR P +R H +R GRGF+ +E+ A GL+ A+ +G+ +D RRR
Sbjct: 10 PIVRKPMLRKHGGLSPGLRVGRGFSKKELEAVGLDLKTAKKLGLRIDKRRR 60
>UniRef50_Q8ZWS7 Cluster: 60S ribosomal protein L13; n=4;
Pyrobaculum|Rep: 60S ribosomal protein L13 - Pyrobaculum
aerophilum
Length = 159
Score = 41.1 bits (92), Expect = 0.005
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +1
Query: 178 RPVVRCPTVRYH---TKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRR 318
+P+V+ P H K + GRGF++ E+RA GL+ AR +GI VD RR
Sbjct: 6 KPLVKTPAKITHGGVVKWKYGRGFSIGELRALGLSVDQARLLGIPVDERR 55
>UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1;
Arabidopsis thaliana|Rep: 60S ribosomal protein L13 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 87
Score = 39.1 bits (87), Expect = 0.021
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +1
Query: 175 LRPVVRCPTVRYHTKVRAGRGFTLREIRASGL 270
LRPVV T++Y+ KV +GFTL E++A+G+
Sbjct: 52 LRPVVHGQTLKYNMKVSTXKGFTLEELKAAGI 83
>UniRef50_Q9YEN9 Cluster: 50S ribosomal protein L13e; n=3;
Desulfurococcales|Rep: 50S ribosomal protein L13e -
Aeropyrum pernix
Length = 80
Score = 39.1 bits (87), Expect = 0.021
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +1
Query: 220 VRAGRGFTLREIRASGLNPSFARTIGIAVDPRRR 321
VR GRGF+L E+ +GL+ AR +G+ VD RRR
Sbjct: 23 VRRGRGFSLGELAEAGLDAKKARKLGLHVDTRRR 56
>UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza
sativa|Rep: 60S ribosomal protein L13 - Oryza sativa
subsp. indica (Rice)
Length = 138
Score = 38.7 bits (86), Expect = 0.027
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 181 PVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSF 282
P+V+C T++Y+ K RAGRGF L E++ F
Sbjct: 47 PIVQCQTLKYNMKSRAGRGFILEELKVLSSRSGF 80
>UniRef50_A3H6W8 Cluster: Ribosomal protein L13; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein L13 -
Caldivirga maquilingensis IC-167
Length = 144
Score = 38.7 bits (86), Expect = 0.027
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +1
Query: 217 KVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRN 324
K++ GRGF++ EI+A L + AR +GI VD RR++
Sbjct: 17 KMKQGRGFSISEIKAINLTVNEARLLGIPVDTRRKS 52
>UniRef50_P58469 Cluster: 50S ribosomal protein L13e; n=1;
Sulfolobus tokodaii|Rep: 50S ribosomal protein L13e -
Sulfolobus tokodaii
Length = 77
Score = 38.7 bits (86), Expect = 0.027
Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Frame = +1
Query: 175 LRPVVRCPTVRYHTK---VRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLP 345
+ P+V+ P R+ + + G+GF+L+E++ SG + A+ + + +D RR+ E++
Sbjct: 2 VEPIVKRPHYRFEIRKKDTKIGKGFSLKELKESGFSVQEAKKLRVRIDKRRKTSYPENVE 61
Query: 346 I 348
+
Sbjct: 62 V 62
>UniRef50_Q97W05 Cluster: 50S ribosomal protein L13e; n=2;
Sulfolobus solfataricus|Rep: 50S ribosomal protein L13e
- Sulfolobus solfataricus
Length = 79
Score = 38.3 bits (85), Expect = 0.036
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +1
Query: 223 RAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESL 342
R GRGF++ E+ +GLN + AR +GI VD RR++ E++
Sbjct: 25 RIGRGFSVGELEKAGLNINKARKLGIFVDIRRKSVHEENV 64
>UniRef50_A1RY56 Cluster: 60S ribosomal protein L13; n=1;
Thermofilum pendens Hrk 5|Rep: 60S ribosomal protein L13
- Thermofilum pendens (strain Hrk 5)
Length = 157
Score = 36.3 bits (80), Expect = 0.15
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 220 VRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESL 342
++ GRGF+ E++A GL AR +GI VD RR+ E++
Sbjct: 30 LKVGRGFSEGEVKALGLTVKEARLLGIYVDERRKTVHPENV 70
>UniRef50_UPI00015BAF4C Cluster: LSU ribosomal protein L13E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L13E - Ignicoccus hospitalis KIN4/I
Length = 96
Score = 34.7 bits (76), Expect = 0.44
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +1
Query: 175 LRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRR 321
L PV+R + K+R GRGF+ E+ A GL+ A +GI +D RR+
Sbjct: 29 LTPVLRKDAGK-KPKMRRGRGFSKGELEAVGLDFKKALKMGIPIDKRRK 76
>UniRef50_A4SXJ1 Cluster: Polar amino acid ABC transporter, inner
membrane subunit; n=8; Burkholderiales|Rep: Polar amino
acid ABC transporter, inner membrane subunit -
Polynucleobacter sp. QLW-P1DMWA-1
Length = 260
Score = 32.7 bits (71), Expect = 1.8
Identities = 12/32 (37%), Positives = 24/32 (75%)
Frame = -1
Query: 120 LSTMTTSWLIKPCLHKSLPILMEMAIWYHIIP 25
L ++T+W+ L +++PIL+++ +WYH+IP
Sbjct: 79 LVRLSTTWVE---LFRNIPILVQVFLWYHVIP 107
>UniRef50_UPI000023D9FA Cluster: hypothetical protein FG09640.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG09640.1 - Gibberella zeae PH-1
Length = 1253
Score = 31.9 bits (69), Expect = 3.1
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -3
Query: 133 LFYSAFYDDDELAD*TMSSQIFANPYGNGHLVSYYSLYP 17
L + YD D L D TMS++ N GN H+VS+Y P
Sbjct: 226 LLKTLIYDSDALQDLTMSAR---NRLGNIHVVSFYETLP 261
>UniRef50_Q83XP1 Cluster: Putative beta-lactam synthetase; n=1;
Streptomyces cattleya|Rep: Putative beta-lactam
synthetase - Streptomyces cattleya
Length = 458
Score = 31.9 bits (69), Expect = 3.1
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = -2
Query: 320 RLRGSTAIP----IVLAKEGFNPEALISRRVNPLPAR 222
R G TA+P + LA GF+ E L++RR + LPAR
Sbjct: 132 RFAGVTAVPAGTAVTLAVAGFDTEPLLTRRYHRLPAR 168
>UniRef50_A1ZIW8 Cluster: Putative uncharacterized protein; n=1;
Microscilla marina ATCC 23134|Rep: Putative
uncharacterized protein - Microscilla marina ATCC 23134
Length = 50
Score = 30.3 bits (65), Expect = 9.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 331 LICCVYVGLQQYQLFWQK 278
L+ C+Y+G Q YQ FW K
Sbjct: 11 LVACIYLGKQLYQTFWGK 28
>UniRef50_A5BJQ2 Cluster: Putative uncharacterized protein; n=2;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 634
Score = 30.3 bits (65), Expect = 9.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 180 TRCSLPYCALSYKSSCRQRIYPT*NKGFWIEP 275
T CS + + SS +RIYPT N+ +W+ P
Sbjct: 537 TLCSKYFTTKALLSSYSERIYPTGNEIYWVVP 568
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 341,180,334
Number of Sequences: 1657284
Number of extensions: 5729113
Number of successful extensions: 14256
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 14046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14238
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 11131607110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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