Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C19
         (348 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...   129   5e-31
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...   128   1e-30
05_04_0020 - 17199627-17199947,17200129-17200203,17200301-172003...    27   3.1  
01_05_0490 + 22672241-22674679                                         27   5.3  
08_02_0923 - 22649420-22649605,22649694-22649774,22649867-226501...    23   7.9  
07_03_0966 - 23016581-23016772,23017242-23017427,23017537-230176...    26   9.3  
05_05_0051 + 21923402-21923763,21923861-21923951,21924048-219241...    26   9.3  

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score =  129 bits (312), Expect = 5e-31
 Identities = 59/109 (54%), Positives = 76/109 (69%)
 Frame = +1

Query: 16  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 195
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 196 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESL 342
            T++Y+ K RAGRGFTL E++A+G+   FA TIGI+VD RR+N+S+E L
Sbjct: 61  QTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGL 109


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score =  128 bits (309), Expect = 1e-30
 Identities = 58/109 (53%), Positives = 76/109 (69%)
 Frame = +1

Query: 16  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 195
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 196 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESL 342
            T++Y+ K RAGRGFTL E++A+G+   +A TIGI+VD RR+N+S+E L
Sbjct: 61  QTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGL 109


>05_04_0020 -
           17199627-17199947,17200129-17200203,17200301-17200384,
           17200483-17200562,17201354-17201508,17202602-17203215
          Length = 442

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 341 NDSTDLLRLRGSTAIPIVLAKEGFNPEALISRRVNPLPARTFV**RT-VGQRTTGLR 174
           + ST      GSTA    LA+  F+ E  +SRR   LPAR FV  +  +G +  GLR
Sbjct: 73  SSSTPAAAAAGSTAAN-PLAR--FSVEPAVSRRQQQLPARQFVGGKVPLGLKRKGLR 126


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 244 LREIRASGLNPSFARTIGIAVDPRRRNKSVESLP 345
           L E+R   + P  A T      PRRR++SVESLP
Sbjct: 451 LEEMRVEEVAP--AATPPPPARPRRRSRSVESLP 482


>08_02_0923 -
           22649420-22649605,22649694-22649774,22649867-22650146,
           22650412-22650716,22650809-22650961,22651425-22652261
          Length = 613

 Score = 22.6 bits (46), Expect(2) = 7.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 84  CLHKSLPILMEMAIW 40
           CL +S P+L E+ +W
Sbjct: 316 CLLRSAPVLEELDVW 330



 Score = 21.8 bits (44), Expect(2) = 7.9
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -1

Query: 306 YSNTNCSGKRRVQSRSPYFT*GKSSA--GTNFCMITH 202
           Y N   S +  V  R P+      S   G NFCM++H
Sbjct: 274 YCNCMLSTEVDVLERLPFLFENLRSLILGVNFCMMSH 310


>07_03_0966 -
           23016581-23016772,23017242-23017427,23017537-23017653,
           23017930-23018084,23018785-23019039,23019226-23019304,
           23019503-23019714,23020644-23020698
          Length = 416

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 132 YSILLSTMTTSWLIKPCLHKSLPILMEMAIWYHIIPFTHFK 10
           Y  +L  M  SWL K CL    P+  E   +  I+   H +
Sbjct: 139 YDTILLKMRPSWLEKDCLEFGPPMYQETIPFSKILHEVHLE 179


>05_05_0051 +
           21923402-21923763,21923861-21923951,21924048-21924196,
           21924279-21924522,21924664-21924768,21924842-21925024,
           21925118-21925319,21925896-21926372,21926680-21926771,
           21927265-21927444
          Length = 694

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 241 TLREIRASGLNPSFARTIGIAVDPR 315
           T  E+RA+G++ +FA  + +  DPR
Sbjct: 133 TALEVRATGIHWTFAPCVAVCRDPR 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,108,424
Number of Sequences: 37544
Number of extensions: 156782
Number of successful extensions: 340
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)