Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C19
         (348 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)             142   9e-35
SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.78 
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             26   9.7  
SB_44807| Best HMM Match : Voltage_CLC (HMM E-Value=0.0094)            26   9.7  

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score =  142 bits (343), Expect = 9e-35
 Identities = 64/107 (59%), Positives = 78/107 (72%)
 Frame = +1

Query: 22  KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 201
           K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+  R               LRP+VRCPT
Sbjct: 4   KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63

Query: 202 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESL 342
            +Y+TKVRAGRGFTL E++A+G+    A TIGIAVD RR+N+S ESL
Sbjct: 64  FKYNTKVRAGRGFTLDELKAAGIPRKVAPTIGIAVDHRRKNRSAESL 110


>SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -3

Query: 223 ELLYDNAQ*GNEQRVLEGQPQDEEQQL*PFLFYSA--FYDDDELAD*TMSS-QIFANPYG 53
           E + + AQ   E R  +   Q+EE+Q+   L  S    +DDDE++D +M S  + A P G
Sbjct: 391 ENIEEAAQKYTELRRQKEGDQEEEEQIKKVLAESRSQVHDDDEMSDESMDSMDVDARPQG 450

Query: 52  NG 47
            G
Sbjct: 451 KG 452


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 168 WPSKTRCSLPYCALSYKSSCRQRIYPT*NKGFWIEPFFCQNNWYCCRPT*TQ 323
           +P+KT+ +  +C  +   +C    +PT  +  W  P   Q NWY   PT TQ
Sbjct: 318 YPTKTQAN--WCHPTKTQACL--CHPTKTQANWYHPSKTQVNWY--HPTKTQ 363



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 240 YPT*NKGFWIEPFFCQNNWYCCRPT*TQ 323
           +P+  K  W  P   Q+NWY   PT TQ
Sbjct: 488 HPSKTKANWYHPIKTQSNWY--HPTKTQ 513


>SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +1

Query: 208 YHTKVRA--GRGFTLREIRASG 267
           YHTK  A  GRG TL  IRA G
Sbjct: 519 YHTKKSAHQGRGITLSSIRAGG 540


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 78  HKSLPILMEMAIWYHIIP 25
           H S+P+ +  +IWYH  P
Sbjct: 311 HPSVPVSLGQSIWYHTHP 328


>SB_44807| Best HMM Match : Voltage_CLC (HMM E-Value=0.0094)
          Length = 142

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 70 FANPYGNGHLVSYYSLY 20
          + NPYG G+LV +Y  Y
Sbjct: 9  YMNPYGTGNLVMFYVEY 25


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,557,417
Number of Sequences: 59808
Number of extensions: 183382
Number of successful extensions: 531
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)