Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C19
(348 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 121 1e-28
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 121 1e-28
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D) 116 3e-27
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ... 108 1e-24
At5g10050.1 68418.m01164 short-chain dehydrogenase/reductase (SD... 27 2.6
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 27 3.4
At3g62710.1 68416.m07044 glycosyl hydrolase family 3 protein exh... 27 4.5
At3g47010.1 68416.m05105 glycosyl hydrolase family 3 protein bet... 27 4.5
At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein si... 27 4.5
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot... 26 6.0
At5g08580.1 68418.m01021 calcium-binding EF hand family protein ... 26 7.9
>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 121 bits (292), Expect = 1e-28
Identities = 57/107 (53%), Positives = 72/107 (67%)
Frame = +1
Query: 22 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 201
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 202 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESL 342
++Y+ KVR G+GFTL E++A+G+ A TIGIAVD RR+N+S+E L
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGL 108
>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 121 bits (292), Expect = 1e-28
Identities = 57/107 (53%), Positives = 72/107 (67%)
Frame = +1
Query: 22 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 201
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 202 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESL 342
++Y+ KVR G+GFTL E++A+G+ A TIGIAVD RR+N+S+E L
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGL 108
>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
Length = 206
Score = 116 bits (280), Expect = 3e-27
Identities = 54/107 (50%), Positives = 71/107 (66%)
Frame = +1
Query: 22 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 201
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 202 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESL 342
++Y+ KVRAG+GFTL E++ +G+ A TIGI+VD RR+N+S+E L
Sbjct: 62 LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGL 108
>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
ribosomal protein L13 (BBC1), Arabidopsis thaliana,
gb:X75162
Length = 206
Score = 108 bits (259), Expect = 1e-24
Identities = 51/105 (48%), Positives = 68/105 (64%)
Frame = +1
Query: 22 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 201
K NN+IPNGHF K W+ +VKT FNQPA + RR+ R +RPVV T
Sbjct: 2 KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQT 61
Query: 202 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVE 336
+ Y+ KVRAG+GFTL E++A+G+ A TIGI+VD R+N+S+E
Sbjct: 62 LTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLE 106
>At5g10050.1 68418.m01164 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198 short
chain dehydrogenase/reductase SDR family
Length = 279
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 281 KEGFNPEALISRRVNPLPARTF 216
+E A IS+R+NP PA TF
Sbjct: 210 EEAIRERAFISQRMNPTPAETF 231
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 216 KSSCRQRIYPT*NKGFWIEPFFCQNNWYCC 305
KS CR R P G +P C+N W C
Sbjct: 651 KSQCRSRQCPCFAAGRECDPDVCRNCWVSC 680
>At3g62710.1 68416.m07044 glycosyl hydrolase family 3 protein
exhydrolase II - Zea mays, EMBL:AF064707
Length = 650
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 241 TLREIRASGLNPSFARTIGIAVDPR 315
T +E+RA+G+ +FA + + DPR
Sbjct: 171 TAQEVRATGVAQAFAPCVAVCRDPR 195
>At3g47010.1 68416.m05105 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 581
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 241 TLREIRASGLNPSFARTIGIAVDPR 315
T EIRASG++ +FA + + DPR
Sbjct: 109 TALEIRASGVHWTFAPCVAVLGDPR 133
>At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein
similar to plant adhesion molecule 1 [Arabidopsis
thaliana] GI:3511223; contains Pfam profile PF00566: TBC
domain
Length = 400
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -1
Query: 129 SILLSTMTTSWLIKPCLHKSLPILMEMAIWYHI 31
S+ LST+T + +K + K +P ++ +W+ +
Sbjct: 97 SLKLSTLTNAITLKRLIRKGIPPVLRPKVWFSL 129
>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
similar to DNA helicase HEL308 [Homo sapiens]
GI:19110782; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00476: DNA polymerase family A
Length = 1548
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 102 SWLIKPCLHKSLPILMEMAIW 40
SWL+ P LH S I M + IW
Sbjct: 1029 SWLMMPPLHTSHTIDMSIVIW 1049
>At5g08580.1 68418.m01021 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 391
Score = 25.8 bits (54), Expect = 7.9
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 139 PFLFYSAFYDDDELAD 92
P++FYSA +D+D+ D
Sbjct: 367 PYVFYSAIFDEDDTDD 382
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,401,495
Number of Sequences: 28952
Number of extensions: 127002
Number of successful extensions: 289
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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