Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C18
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...    88   4e-19
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    88   4e-19
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    29   0.22 
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    28   0.51 
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    26   2.7  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    26   2.7  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   4.7  
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    25   6.2  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    25   6.2  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    24   8.2  

>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score = 88.2 bits (209), Expect = 4e-19
 Identities = 43/72 (59%), Positives = 49/72 (68%)
 Frame = +2

Query: 8   GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
           GRVRT             YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R+
Sbjct: 2   GRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRI 61

Query: 188 IHSQVRGISIKL 223
               VRGIS KL
Sbjct: 62  QRGPVRGISFKL 73



 Score = 47.6 bits (108), Expect = 8e-07
 Identities = 25/51 (49%), Positives = 32/51 (62%)
 Frame = +3

Query: 249 DNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQPATQGGYGGRR 401
           D YVPEVS LE D + VD DTKDMLK L +  I  +++  PA Q  +  R+
Sbjct: 82  DQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQERFRRRQ 131


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 88.2 bits (209), Expect = 4e-19
 Identities = 43/72 (59%), Positives = 49/72 (68%)
 Frame = +2

Query: 8   GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
           GRVRT             YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R+
Sbjct: 2   GRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRI 61

Query: 188 IHSQVRGISIKL 223
               VRGIS KL
Sbjct: 62  QRGPVRGISFKL 73



 Score = 48.0 bits (109), Expect = 6e-07
 Identities = 22/33 (66%), Positives = 25/33 (75%)
 Frame = +3

Query: 249 DNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 347
           D YVPEVS LE+D I VD DTKDMLK L + +I
Sbjct: 82  DQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 29.5 bits (63), Expect = 0.22
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 220 LNRDSSHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE 86
           +NR   +L +  +  ++ G    FV + LS+ND NF+  P +G E
Sbjct: 228 MNRPQRYLTI--SKQRLAGSDPYFV-RSLSKNDKNFIMIPTVGYE 269


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -2

Query: 205 SHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE----VKSKPSVVFF 56
           SH+ + +T+ +  G P   V KR+   D N L +    IE    +KS P VV +
Sbjct: 37  SHVYLVQTNSKTDGSPITAVLKRMYSPDENALRFVKTEIETMELLKSNPHVVSY 90


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 261 GHNCHAFHAPLLASLIEIPRTW 196
           GH+      PL+A+ +E+P+ W
Sbjct: 43  GHDNFGLKPPLIATKLEVPKRW 64


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 20/74 (27%), Positives = 27/74 (36%)
 Frame = -2

Query: 337 KSSIFNISLVSESTSMISCSRADTSGTXXXXXXXXXSCKLNRDSSHLGVYETSHQMGGEP 158
           K + F     SE   +I     D +           +    R+ +   +  TS  MGG P
Sbjct: 404 KKASFLEQKASEQEEVIRKLEKDLADVDVEGSVYLSNTTYRREGTSGQLSPTSSIMGGNP 463

Query: 157 SNFVAKRLSRNDSN 116
           S F    LSRN  N
Sbjct: 464 SLFNGSVLSRNSVN 477


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 285 PVLEQILLGHNCHAF 241
           P+LEQ+L G+NC  F
Sbjct: 142 PMLEQVLNGYNCTIF 156


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 157 WVHHPFDETSHTLPGARNLY*ACKKRSVKGVTIMSQKYLL 276
           W+   F ET   +P  + L  ACK    + + I  ++++L
Sbjct: 180 WIASKFHETEDRVPLLQELKLACKNIYAEDLFIRMERHIL 219


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 69  LGLLLTSIPIKGYVRKLLSFLLSLFATKLL 158
           +GLL TS  I    R  L   ++LFAT LL
Sbjct: 94  VGLLYTSASIYQMTRGSLIIFVALFATTLL 123


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 113 EIAIIPTKPLRNKIAGFTTHLMRRLIHSQVR 205
           EIA++ TKP  + I G       RL  S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,548,694
Number of Sequences: 5004
Number of extensions: 28064
Number of successful extensions: 87
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)