Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C18
(416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0174 + 13815478-13815903 91 3e-19
03_01_0066 - 537729-538163 89 1e-18
02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114... 31 0.37
05_04_0273 + 19632430-19632762,19633109-19633177,19633318-196333... 29 2.0
06_03_1207 + 28418473-28421073 28 2.6
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 27 6.0
01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942 27 6.0
08_01_0057 - 383603-384256 27 8.0
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421... 27 8.0
>10_07_0174 + 13815478-13815903
Length = 141
Score = 91.1 bits (216), Expect = 3e-19
Identities = 41/72 (56%), Positives = 52/72 (72%)
Frame = +2
Query: 8 GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
GRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGFTTHLMRR+
Sbjct: 2 GRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRI 61
Query: 188 IHSQVRGISIKL 223
VRGIS+KL
Sbjct: 62 QRGPVRGISLKL 73
Score = 35.9 bits (79), Expect = 0.013
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 252 NYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQPATQGGY 389
++VPE SALE + I VD +T +ML L +++ G++ Q + Y
Sbjct: 83 DFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQEVSAPTY 128
>03_01_0066 - 537729-538163
Length = 144
Score = 89.4 bits (212), Expect = 1e-18
Identities = 40/72 (55%), Positives = 52/72 (72%)
Frame = +2
Query: 8 GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
GRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR+
Sbjct: 2 GRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRI 61
Query: 188 IHSQVRGISIKL 223
VRGIS+KL
Sbjct: 62 QRGPVRGISLKL 73
Score = 35.1 bits (77), Expect = 0.023
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +3
Query: 252 NYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQP 371
++VP+ SALE D I VD +T DML L +++ G+ + QP
Sbjct: 83 DFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121
>02_04_0449 +
23010099-23010317,23010873-23010934,23011399-23011450,
23011803-23011917,23012024-23012118,23012852-23012958,
23013042-23013156,23014159-23014203,23014324-23014392
Length = 292
Score = 31.1 bits (67), Expect = 0.37
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 370 GCVSCRPLMLLKSSIFNISLVSESTSMISCSRADT 266
GC + +K+ +F+I LVSE S+I+C A T
Sbjct: 148 GCGNAAVSKNVKNKVFSIDLVSEDPSVIACDMAHT 182
>05_04_0273 +
19632430-19632762,19633109-19633177,19633318-19633374,
19633534-19633597,19633887-19634102,19634761-19634803,
19635267-19635345,19635467-19635559
Length = 317
Score = 28.7 bits (61), Expect = 2.0
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = -2
Query: 223 KLNRDSSHLGVYET----SHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIEVKSKPSVVFF 56
+LNRD + L V++ S Q +P+N K SNF + +G+ +P V
Sbjct: 127 RLNRDVAKLEVFKKTLMQSLQEDEDPANTTPKARVSETSNFSSATSVGVPRPPRPHVFLP 186
Query: 55 DYN 47
YN
Sbjct: 187 SYN 189
>06_03_1207 + 28418473-28421073
Length = 866
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 222 SLIEIPRTWECMRRLIKWVVNPAILLRRGLV 130
+LIE+ TW+ + R++K +NP + L+
Sbjct: 677 NLIELDITWQLLERMVKHGLNPTVTTYSSLI 707
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 27.1 bits (57), Expect = 6.0
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Frame = +3
Query: 300 DSDTK---DMLKMLDFSNIN-GLQLTQPATQGGYGGR 398
D D+K D++K+L+ +N + QL ++GGYGGR
Sbjct: 530 DQDSKYASDLVKILEGANQSVSQQLRDMVSRGGYGGR 566
>01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942
Length = 1020
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 306 PNRLQ*YPVLEQILLGHNCHAFHAPLLASLIEIPRTWE 193
PN + P L+Q+ L HN F P+ A+L + W+
Sbjct: 545 PNTIARIPNLQQLFLAHN--NFSGPIPATLQNLTTLWQ 580
>08_01_0057 - 383603-384256
Length = 217
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 254 LCPRSICSRTGYH*SRFGHQGYVEDA 331
L P ++CSR+G S+ GH G+ + A
Sbjct: 9 LMPATLCSRSGPPSSKHGHGGHAKRA 34
>06_01_0587 -
4211917-4212021,4212250-4212478,4213426-4213759,
4215116-4215186,4215374-4215493,4216353-4216771,
4216885-4217336,4217434-4217812
Length = 702
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 306 DTKDMLKMLDFSNINGLQLTQPATQ 380
DTKDMLK +D+ + G +T +Q
Sbjct: 597 DTKDMLKNVDWKTVGGGSVTTDPSQ 621
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,704,495
Number of Sequences: 37544
Number of extensions: 174119
Number of successful extensions: 411
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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