Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C18
         (416 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.29 
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)                   27   4.7  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  

>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2021

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -2

Query: 226  CKLNRDSSHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIEVKSK 74
            C L+ D+S +   + SH    + S  +  +++ ++SN + +P  GI  + K
Sbjct: 1878 CPLHPDASRVNYEKDSHNNSAKKSGLLTVKVNIDNSNCMHFPISGISTQDK 1928


>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
          Length = 3035

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 130 Y*ASSQQNCWVHHPFDETSHTLPGARNLY*ACKKRSVKGV 249
           Y A+   NC++H    E S TLP A      C + S  GV
Sbjct: 715 YSANPATNCFIHDECSECSDTLPTACTSTMRCLRYSGTGV 754


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 62  YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 151
           YY++LT D+D+ K    EI I+P+ P+  K
Sbjct: 14  YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42


>SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 328 IFNISLVSESTSMISCSRADTSGTXXXXXXXXXSCKLNRDSSH 200
           I N +  +E   ++SC R+D               +L+R+SSH
Sbjct: 229 ILNRTFRTEFIKILSCKRSDVPSQTSTEAMEMKKLRLSRESSH 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,422,816
Number of Sequences: 59808
Number of extensions: 202866
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)