Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C18
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...    89   1e-18
U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical pr...    29   1.8  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score = 89.0 bits (211), Expect = 1e-18
 Identities = 42/71 (59%), Positives = 49/71 (69%)
 Frame = +2

Query: 11  RVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRLI 190
           RVRT             YYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+ 
Sbjct: 3   RVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIE 62

Query: 191 HSQVRGISIKL 223
              VRGISIKL
Sbjct: 63  RGPVRGISIKL 73



 Score = 34.3 bits (75), Expect = 0.036
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
 Frame = +3

Query: 249 DNYVPEVSALEQD---IIEVDSDTKDMLKMLDFS 341
           DNY+PE+S ++      I+VD+DT DMLK   F+
Sbjct: 82  DNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical
           protein C56G3.1a protein.
          Length = 490

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 154 NFVAKRLSRNDSNFLTYPFIGI 89
           N+  + +S N SN+LTYPF G+
Sbjct: 8   NYCDRGISPNASNYLTYPFDGL 29


>U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical
           protein C56G3.1b protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 154 NFVAKRLSRNDSNFLTYPFIGI 89
           N+  + +S N SN+LTYPF G+
Sbjct: 28  NYCDRGISPNASNYLTYPFDGL 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,464,286
Number of Sequences: 27780
Number of extensions: 153439
Number of successful extensions: 379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)