Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C18
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   3.2  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   5.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   9.7  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 342 NINGLQLTQPATQGGYGGRRN*TNV 416
           N+    LT+P T   YG R N T V
Sbjct: 196 NVLATSLTEPYTLRNYGRRINCTYV 220


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 94  GIEVKSKPSVVFFDYNLRRFFYGLSPNTTL 5
           GI  K     V++DY    +F  LSPN T+
Sbjct: 60  GIHRKKVLLSVWWDYKGIVYFELLSPNRTI 89


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 249 DNYVPEVSALEQDIIEVDSDTKDMLKM 329
           D+  PE    E++  ++D D+ DM+++
Sbjct: 314 DDIPPETEEEEENDKKLDLDSIDMMQL 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,954
Number of Sequences: 438
Number of extensions: 1967
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)