Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C18
         (416 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ...    91   4e-19
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ...    91   4e-19
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi...    91   4e-19
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)            91   4e-19
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)            91   4e-19
At5g40530.2 68418.m04918 expressed protein contains Pfam profile...    32   0.18 
At5g40530.1 68418.m04919 expressed protein contains Pfam profile...    32   0.18 
At4g24450.1 68417.m03505 starch excess protein-related similar t...    28   2.2  
At1g13630.1 68414.m01601 pentatricopeptide (PPR) repeat-containi...    27   5.1  
At5g47020.1 68418.m05795 glycine-rich protein strong similarity ...    27   6.7  
At2g28930.1 68415.m03515 protein kinase (APK1b) identical to pro...    27   6.7  

>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score = 90.6 bits (215), Expect = 4e-19
 Identities = 43/72 (59%), Positives = 52/72 (72%)
 Frame = +2

Query: 8   GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
           GRVRT             YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R+
Sbjct: 2   GRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 61

Query: 188 IHSQVRGISIKL 223
               VRGIS+KL
Sbjct: 62  QKGPVRGISLKL 73


>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score = 90.6 bits (215), Expect = 4e-19
 Identities = 43/72 (59%), Positives = 52/72 (72%)
 Frame = +2

Query: 8   GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
           GRVRT             YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R+
Sbjct: 2   GRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 61

Query: 188 IHSQVRGISIKL 223
               VRGIS+KL
Sbjct: 62  QKGPVRGISLKL 73


>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
           to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
           esculentum]
          Length = 140

 Score = 90.6 bits (215), Expect = 4e-19
 Identities = 43/72 (59%), Positives = 52/72 (72%)
 Frame = +2

Query: 8   GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
           GRVRT             YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R+
Sbjct: 2   GRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 61

Query: 188 IHSQVRGISIKL 223
               VRGIS+KL
Sbjct: 62  QKGPVRGISLKL 73


>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
          Length = 140

 Score = 90.6 bits (215), Expect = 4e-19
 Identities = 43/72 (59%), Positives = 52/72 (72%)
 Frame = +2

Query: 8   GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
           GRVRT             YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R+
Sbjct: 2   GRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 61

Query: 188 IHSQVRGISIKL 223
               VRGIS+KL
Sbjct: 62  QKGPVRGISLKL 73


>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
          Length = 141

 Score = 90.6 bits (215), Expect = 4e-19
 Identities = 43/72 (59%), Positives = 52/72 (72%)
 Frame = +2

Query: 8   GRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRRL 187
           GRVRT             YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R+
Sbjct: 2   GRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 61

Query: 188 IHSQVRGISIKL 223
               VRGIS+KL
Sbjct: 62  QKGPVRGISLKL 73


>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 301

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 370 GCVSCRPLMLLKSSIFNISLVSESTSMISCSRADTS 263
           GC   R    +K+ +F+  LVS++ S+I+C  ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177


>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 287

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 370 GCVSCRPLMLLKSSIFNISLVSESTSMISCSRADTS 263
           GC   R    +K+ +F+  LVS++ S+I+C  ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177


>At4g24450.1 68417.m03505 starch excess protein-related similar to
            SEX1 [Arabidopsis thaliana] GI:12044358
          Length = 1284

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 166  GEPSNFVAKRLSRNDSNFLTYPFIGIEVKSKPSVVF 59
            G   +F+ K+ +      ++YP   I + SKPS++F
Sbjct: 1162 GRAMSFITKKTNLKSPTVISYPSKRIGLYSKPSIIF 1197


>At1g13630.1 68414.m01601 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 764

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 54  SKNTTLGLLLTSIPIKGYVRKLLSFLLSL 140
           + + T  +L+ S+ + GY+RK  SF+ SL
Sbjct: 633 ASSATYNILIDSLCVYGYIRKADSFIYSL 661


>At5g47020.1 68418.m05795 glycine-rich protein strong similarity to
            unknown protein (emb|CAB87688.1)
          Length = 1417

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3

Query: 279  LEQILLGHNCHAFHAPLLASLIEIPRTWECMRRLIKWVVNPAILL 145
            L  +++   C   H+       E+P  W  +R   KW V P  LL
Sbjct: 1336 LTNVIVAFICGVIHSGFFTD--ELPNIWNAIRDDDKWWVLPTFLL 1378


>At2g28930.1 68415.m03515 protein kinase (APK1b) identical to
           protein kinase APK1B [Arabidopsis thaliana]
           SWISS-PROT:P46573
          Length = 423

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
 Frame = -2

Query: 355 RPLMLLKSSIFNI--SLVSESTSMISCSRADTSGTXXXXXXXXXSCKLNRDSSHLGVYET 182
           RPL+  K  +F +  + + +  SM    +  T               +N   SHL   +T
Sbjct: 308 RPLLANKRKLFRVIDNRLQDQYSMEEACKVATLALRCLTFEIKLRPNMNEVVSHLEHIQT 367

Query: 181 SHQMGGEPSNFVAKRLSRNDSN 116
            ++ GG   + V +R+ R   +
Sbjct: 368 LNEAGGRNIDMVQRRMRRRSDS 389


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,985,241
Number of Sequences: 28952
Number of extensions: 144648
Number of successful extensions: 361
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)