Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C17
(487 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 6e-24
SB_26864| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_23700| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19) 28 4.7
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5) 28 4.7
SB_6886| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016) 27 8.2
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 107 bits (256), Expect = 6e-24
Identities = 54/111 (48%), Positives = 66/111 (59%)
Frame = +2
Query: 95 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 274
MAS +ELACVYSALIL DDDVA+T +KI T++KAA ++VEP+WPGLFAKAL+G N+ DLI
Sbjct: 1 MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60
Query: 275 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 427
+ G+ DDDMGFGLFD
Sbjct: 61 LSAGA-PGAGGAVAAAPAAGGEAKAEEKKEEAKKEESEEESDDDMGFGLFD 110
>SB_26864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 30.7 bits (66), Expect = 0.67
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -1
Query: 88 CYTCKSPKGLSSGRTSTFDPR--AEFLQPGG 2
C T K+P +S+G+ S R EFLQPGG
Sbjct: 38 CVTAKAPPDISAGKCSGHAARNHIEFLQPGG 68
>SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -2
Query: 66 KALAQGEQARLTLVPNSCSPGD 1
+A +G + R++L+ NSCSPGD
Sbjct: 21 RAPPRGRRYRVSLISNSCSPGD 42
>SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 254 CPPRPLQIDQASTAQHLQQPLSVWLR 177
CPP+PL + ST +H Q ++R
Sbjct: 412 CPPKPLSLSDTSTLRHNSQTSPTFIR 437
>SB_23700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 48 EQARLTLVPNSCSPGD 1
E+ R+T V NSCSPGD
Sbjct: 3 EEFRITAVSNSCSPGD 18
>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1883
Score = 27.9 bits (59), Expect = 4.7
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Frame = -2
Query: 288 DPMLVIKSRTLMP--SKAFANRPGQYGSTSTAAAFSMVEIFSPVTATSSSTRIRAE*TQA 115
D + + S P SK FA +PG T + + S VTA +S R + +
Sbjct: 1587 DRIKAVSSSVTAPKTSKRFATKPGSSIDAPTGNKHRIKAVSSSVTAPKTSKRFATKPGSS 1646
Query: 114 NSAFDAILNVIRASRQKALAQGEQARLTLVPNS 16
A I + I+A A R P S
Sbjct: 1647 IDAPTGIKDRIKAVSSSVTAPKTSERFATKPGS 1679
>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
Length = 754
Score = 27.9 bits (59), Expect = 4.7
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Frame = -2
Query: 288 DPMLVIKSRTLMP--SKAFANRPGQYGSTSTAAAFSMVEIFSPVTATSSSTRIRAE*TQA 115
D + + S P SK FA +PG T + + S VTA +S R + +
Sbjct: 458 DRIKAVSSSVTAPKTSKRFATKPGSSIDAPTGNKHRIKAVSSSVTAPKTSKRFATKPGSS 517
Query: 114 NSAFDAILNVIRASRQKALAQGEQARLTLVPNS 16
A I + I+A A R P S
Sbjct: 518 IDAPTGIKDRIKAVSSSVTAPKTSERFATKPGS 550
>SB_6886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 87 VIRASRQKALAQGEQARL-TLVPNSCSPGD 1
++RA + A Q + T+V NSCSPGD
Sbjct: 57 ILRARKANAQVQKHHRGVNTIVSNSCSPGD 86
>SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)
Length = 999
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +2
Query: 56 AKAFWRLARITFKMASKAELACVYSALILVDDDVAVTGEKIS 181
A+ WR+ K + + C +L DDD+A T ++
Sbjct: 740 ARKEWRVVSSFVKSLEEGKATCSSGLAVLTDDDLATTSRPLT 781
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 398 DDDMGFGLFD 427
DDDMGFGLFD
Sbjct: 753 DDDMGFGLFD 762
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,206,762
Number of Sequences: 59808
Number of extensions: 185165
Number of successful extensions: 1447
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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