Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C17
         (487 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic ri...   102   6e-22
BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, larg...   102   6e-22
BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, larg...   102   6e-22
AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1 pr...   102   6e-22
CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.               102   8e-22
AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal phosph...   100   3e-21
CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.                96   7e-20
X87832-1|CAB57274.1| 1754|Homo sapiens NOV/plexin-A1 protein pro...    31   2.8  

>M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P1 mRNA, complete cds. ).
          Length = 114

 Score =  102 bits (245), Expect = 6e-22
 Identities = 52/114 (45%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
 Frame = +2

Query: 95  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 274
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 275 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 427
            N+G+G                                      DDDMGFGLFD
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


>BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score =  102 bits (245), Expect = 6e-22
 Identities = 52/114 (45%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
 Frame = +2

Query: 95  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 274
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 275 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 427
            N+G+G                                      DDDMGFGLFD
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


>BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score =  102 bits (245), Expect = 6e-22
 Identities = 52/114 (45%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
 Frame = +2

Query: 95  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 274
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 275 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 427
            N+G+G                                      DDDMGFGLFD
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


>AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1
           protein.
          Length = 114

 Score =  102 bits (245), Expect = 6e-22
 Identities = 52/114 (45%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
 Frame = +2

Query: 95  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 274
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 275 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 427
            N+G+G                                      DDDMGFGLFD
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


>CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score =  102 bits (244), Expect = 8e-22
 Identities = 51/114 (44%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
 Frame = +2

Query: 95  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 274
           MAS +ELAC+YSAL+L DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALVLHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 275 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 427
            N+G+G                                      DDDMGFGLFD
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


>AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal
           phosphoprotein P1 protein.
          Length = 113

 Score =  100 bits (239), Expect = 3e-21
 Identities = 51/113 (45%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
 Frame = +2

Query: 95  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 274
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 275 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLF 424
            N+G+G                                      DDDMGFGLF
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLF 113


>CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 95.9 bits (228), Expect = 7e-20
 Identities = 50/114 (43%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
 Frame = +2

Query: 95  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 274
           MAS +ELA +YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELARIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 275 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 427
            ++G+G                                      DDDMGFGLFD
Sbjct: 61  CDVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


>X87832-1|CAB57274.1| 1754|Homo sapiens NOV/plexin-A1 protein
           protein.
          Length = 1754

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -3

Query: 278 WLLNHEH*CPPRPLQIDQASTAQHLQQPL 192
           WLLN E  C   PLQID     Q   QPL
Sbjct: 365 WLLNKELGCINSPLQIDDDFRGQDFNQPL 393


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,753,460
Number of Sequences: 237096
Number of extensions: 987521
Number of successful extensions: 1616
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1613
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)