Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C17
(487 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 121 3e-28
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 117 4e-27
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 30 0.77
U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical pr... 29 2.4
AL032643-6|CAA21657.1| 538|Caenorhabditis elegans Hypothetical ... 28 3.1
Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z70683-3|CAA94589.1| 435|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 27 7.2
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 27 7.2
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 121 bits (291), Expect = 3e-28
Identities = 58/111 (52%), Positives = 70/111 (63%)
Frame = +2
Query: 95 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 274
MAS ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60
Query: 275 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 427
T++ SG DDDMGFGLFD
Sbjct: 61 TSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 117 bits (282), Expect = 4e-27
Identities = 57/111 (51%), Positives = 69/111 (62%)
Frame = +2
Query: 95 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 274
MAS ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60
Query: 275 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 427
T++ SG DDDMGFGLFD
Sbjct: 61 TSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 30.3 bits (65), Expect = 0.77
Identities = 22/90 (24%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
Frame = +2
Query: 170 EKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXX 349
+ + IL A VD + L L G V +LI +G+
Sbjct: 21 DDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGLVSVSGGAAPAAAAAPAAG 80
Query: 350 XXXXXXXXXXXXXXX----XDDDMGFGLFD 427
DDDMGFGLFD
Sbjct: 81 GAAPAADSKPAKKEEPKEESDDDMGFGLFD 110
>U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical
protein B0432.7 protein.
Length = 621
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 119 CVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 289
C ++ L + DDD +T + + +L+ V PG+ A G NV + IGS
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNVLNYGFFIGS 325
>AL032643-6|CAA21657.1| 538|Caenorhabditis elegans Hypothetical
protein Y54E5A.4 protein.
Length = 538
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 219 YGSTSTAAAFSMVEIFSPVTATSSSTRIRAE*TQANSAF 103
+GST+T AFS +F T+T++S+ T S F
Sbjct: 471 FGSTATKPAFSGGSLFGATTSTATSSAAATTTTPTTSLF 509
>Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical
protein C01G10.7 protein.
Length = 324
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 92 KMASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPY 220
KM K + S ++ ++D VA+T + + + AAA+D PY
Sbjct: 37 KMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79
>Z70683-3|CAA94589.1| 435|Caenorhabditis elegans Hypothetical
protein F13B12.4 protein.
Length = 435
Score = 27.9 bits (59), Expect = 4.1
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = -2
Query: 228 PGQYGSTSTAAAFSMVEIFS-PVTATSSSTRIRAE*---TQANSAFDAILNVIRASRQKA 61
P YG T++ + E P A+ ++ RI E +++ + ++++ +A + KA
Sbjct: 300 PVWYGETTSLTRNVIHEAMKMPDIASVATMRILDEKGYNVGPSTSLNFLVSLYKAYQNKA 359
Query: 60 LAQGEQARLTLVPNSCSPGD 1
+ RLT+V +C PGD
Sbjct: 360 RKSAIKHRLTIVTLACDPGD 379
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 398 DDDMGFGLFD 427
DDDMGFGLFD
Sbjct: 303 DDDMGFGLFD 312
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 398 DDDMGFGLFD 427
DDDMGFGLFD
Sbjct: 98 DDDMGFGLFD 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,923,142
Number of Sequences: 27780
Number of extensions: 139914
Number of successful extensions: 317
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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