Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C16
         (448 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   1.7  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   5.3  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   7.0  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    20   9.3  

>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 373 HYIRTTPGPAVVSQPRRLAPDRLR 444
           H ++ T G     QP+RLAP  L+
Sbjct: 64  HGLQPTMGDYTQLQPQRLAPTHLQ 87


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 447 DAKSIRR*ATWLADDG 400
           D KSIR    W+ D+G
Sbjct: 405 DEKSIRNKMKWIKDNG 420


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 128 TTSAITKRQLKARRSPKSNDKLIQP*VLITEP 33
           TTS  T+  L  + + K + K     V++T+P
Sbjct: 164 TTSTTTRTTLTTKFTTKPSTKPTNKPVVVTKP 195


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 100 NWRFVIADVVKPIIGIDFLSFYNLLVDARHNRL 198
           +W    AD  K  IGI F      LVDA  + L
Sbjct: 239 HWILSGADPQKLAIGIAFYGHAFTLVDASQHDL 271


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,522
Number of Sequences: 336
Number of extensions: 2115
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10090848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)