Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C16
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    29   0.43 
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   1.7  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   3.0  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   4.0  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   5.3  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    25   7.0  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    25   7.0  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    24   9.3  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.3  

>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 28.7 bits (61), Expect = 0.43
 Identities = 13/76 (17%), Positives = 32/76 (42%)
 Frame = +1

Query: 205 NTTSLVAKAISTTSPNVYQIKTITGISRFHDVLAKYPDITRPAGDPTKRMVKHSTVHYIR 384
           N +S  A A+ T +P+   +  ++ +  + +       +  P           + + ++ 
Sbjct: 434 NPSSGAASAVITRNPSETSLADLSRVPSYKEATRSAVPLESPLQSTLPSYEDVARIEHLS 493

Query: 385 TTPGPAVVSQPRRLAP 432
             P P +V+ P+R +P
Sbjct: 494 RPPSPGIVTPPQRTSP 509


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 196 LIDNTTSLVAKAISTTSPNVYQIKTITGISRFHDVLAKYPDIT 324
           LI  +    +  +STTS   +  KTIT  S   D  + Y D T
Sbjct: 85  LISTSGQFTSNNVSTTSSQRHNTKTITFFSGTSDYTSVYYDTT 127


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 159 RKKVYADNRLNNVSYHKTPIKSTTQSKVQ 73
           +KK+ A NRL+N+ Y+   ++   + +VQ
Sbjct: 353 KKKLDAINRLSNIIYYSERVRCEIEDQVQ 381


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +1

Query: 190 NRLIDNTTSLVAKAISTTSPNVYQIKTITGISRFHDVLAKYPDITR 327
           N  +D  + +V K ++    ++++   I   + F+D+++  P ITR
Sbjct: 631 NAALDLISLIVNKVLALFDLSLFEKHNIPAPTNFNDIISFIPSITR 676


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 302 WQNIRTSRALLETQQSAWSSILPCITFAQLRGLPSSA---NHVA*RRIDFAS 448
           W+ ++     +    ++ ++++    F++L GL  +A   +H+A RR+D AS
Sbjct: 60  WRKVKVRLMNISYSPASVTAVVKSQDFSRLNGLNGAAFAGDHLAIRRVDGAS 111


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 259 QIKTITGISRFHDVLAKYPDITR 327
           Q K +T  SRF D +AKYP++ R
Sbjct: 353 QHKALT--SRFDDFVAKYPNLIR 373


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +2

Query: 227 KQFLLHHLTCTKLRPLQVFPAFTTYWQNIRTSRALLETQQSAWSSILPCITFAQ 388
           +Q L  H    +   L VFP       N + S ++    ++  S+  P I FAQ
Sbjct: 23  RQLLDQHSEALQSVKLLVFPEMCLTGYNFKNSESIQPFLENVTSNHCPSIQFAQ 76


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 248 LTCTKLRPLQVFPAFTTYWQNIRTSRAL 331
           L+ +  RP +VFP F+T ++    SR L
Sbjct: 645 LSASVRRPSKVFPLFSTSFETTPISRKL 672


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 310 YPDITRPAGDPTKRMVKHSTVHYIRTTPGPAVV 408
           Y D  RP G   +R  +   V + R  PG  VV
Sbjct: 151 YKDSGRPCGRCARRFGRSYDVQFSRPPPGALVV 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,714
Number of Sequences: 5004
Number of extensions: 34702
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)