Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C16
         (448 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0115 + 22868554-22868749,22868863-22868912,22870009-228701...    30   0.74 
01_06_1584 - 38441654-38442847                                         30   0.97 
04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995...    27   5.2  
09_02_0500 - 9950007-9950303,9950728-9951942,9952171-9952383           27   6.9  
03_01_0177 + 1424773-1424850,1425307-1425391,1425498-1425577,142...    27   6.9  
12_02_0284 - 16791153-16791212,16791392-16791925,16792266-167926...    27   9.1  

>04_04_0115 +
           22868554-22868749,22868863-22868912,22870009-22870195,
           22870226-22870333,22872501-22873165
          Length = 401

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
 Frame = +1

Query: 76  DFGLRRAFNWRFVIADVVKP---------IIGIDFLSFYNLLVDARHNRLIDNTTSLVAK 228
           DF +R   NW  VI  VV P         ++G D ++ Y +        L+    + +AK
Sbjct: 44  DFSIR-VTNWGAVIMSVVLPDSRGKLDDVVLGYDTIAEY-VNSSTYFGALVGRVANRIAK 101

Query: 229 AISTTSPNVYQIKTITGISRFHDVLAKYPDI 321
           A        Y +    G +  H +L K+P++
Sbjct: 102 ARFVLDGKAYHLYPNDGKNTLHGILEKFPEV 132


>01_06_1584 - 38441654-38442847
          Length = 397

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = -3

Query: 389 VVRM*CTVECLTMRFVGSPAGRVMSGYFANTS*KREIPVMVLIWYTLGDVVEIALATNEV 210
           V+ + C  + +  RF       +  GYF      R + +++ IW+ +G++V ++    ++
Sbjct: 24  VLGLFCIFQSIYFRFRIRRGAFIPLGYFNGPWVTRIVLILITIWWGVGEIVRLSFLKRKL 83

Query: 209 VLSISL 192
             SI L
Sbjct: 84  FSSILL 89


>04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,
            9951287-9951415,9951782-9952012,9952655-9952732,
            9953035-9953055,9953790-9953855,9953935-9954015,
            9954148-9954920,9955461-9955654,9956723-9956817,
            9958190-9958219,9958334-9958453,9959185-9959262,
            9959428-9959505,9960459-9960488,9960614-9960739,
            9961239-9961379,9963416-9963532,9963619-9963670,
            9963759-9963890,9964668-9964720,9964816-9964911,
            9965255-9965260,9965416-9965561,9966494-9966629,
            9966885-9967038,9968017-9968154,9968268-9968614
          Length = 1295

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 144  ADNRLNNVSYHKTPIKSTTQSKVQ*QINPTVSTYN 40
            +D+RL N+ +H+  I  T++  +     P ++T+N
Sbjct: 950  SDSRLRNLRFHRVSIDITSREDIPTLGRPRITTFN 984


>09_02_0500 - 9950007-9950303,9950728-9951942,9952171-9952383
          Length = 574

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +2

Query: 290 FTTYWQNIRTSRALLETQQSAWSSILPCITFAQLRGLPSSA 412
           FT+ +QN  +   ++ETQ +  +S++P     ++ G P+S+
Sbjct: 162 FTSAFQNQLSFNQMIETQLAQLASLVPANDTGRIPGQPNSS 202


>03_01_0177 +
           1424773-1424850,1425307-1425391,1425498-1425577,
           1425771-1425898,1425962-1426049,1426187-1426277,
           1426712-1426881,1427151-1427438,1427527-1427643,
           1427924-1427976,1428029-1428090,1429042-1429118,
           1429269-1429322,1429417-1429476,1429581-1429658,
           1429805-1429851,1429933-1430051,1430280-1430364,
           1430443-1430557,1430662-1430784,1430869-1430969,
           1431346-1431475
          Length = 742

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = +1

Query: 175 VDARHNRLIDNTTSL--VAKAISTTSPNVYQIKTITGISRFHDVLAKYPDITRPAGDPTK 348
           VD+ HN+ + +TT    + K +      V     I G++ F D ++  PD T     PT 
Sbjct: 58  VDSPHNKWVYDTTQFDNILKKLK-----VVLFDNIFGVAEFEDDVSNSPDSTPKEAKPTN 112

Query: 349 RMVKHST 369
             V   T
Sbjct: 113 NEVTKVT 119


>12_02_0284 -
           16791153-16791212,16791392-16791925,16792266-16792637,
           16793754-16794105,16794107-16794795,16821179-16821574
          Length = 800

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +2

Query: 290 FTTYWQNIRTSRALLETQQSAWSSILPCITFAQLRGLPSSA 412
           F + +QN  +   +++TQ +  +S++P I   ++ G P S+
Sbjct: 166 FASVFQNQLSFNKMIQTQLAQLASLVPAIETGRIPGQPDSS 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,363,817
Number of Sequences: 37544
Number of extensions: 237221
Number of successful extensions: 737
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)