Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C16
(448 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9985| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.047
SB_17298| Best HMM Match : RVT_1 (HMM E-Value=0.86) 31 0.33
SB_33698| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_36841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_55243| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_41354| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_31592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_38767| Best HMM Match : Filamin (HMM E-Value=0.034) 28 3.1
SB_19659| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_31086| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_49082| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_43538| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_42579| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_40500| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_34552| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_10641| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_50060| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_44516| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_59788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_49256| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_48026| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_42337| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_30336| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_401| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_50800| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45) 27 9.3
SB_40986| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_33203| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_32090| Best HMM Match : Rcd1 (HMM E-Value=6.2e-08) 27 9.3
SB_16436| Best HMM Match : DUF765 (HMM E-Value=9.2) 27 9.3
SB_15537| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_9854| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_9985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 34.3 bits (75), Expect = 0.047
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -2
Query: 162 KRKKVYADNRLNNVSYHKTPIKSTTQSKVQ*QINPTVSTYN*APRANSCSPGDP 1
K +K + + YH TQ K Q I+ + PR+NSCSPGDP
Sbjct: 27 KERKAESPLSIKRSKYHTRERDQQTQLKTQ--IDTFILILQPHPRSNSCSPGDP 78
>SB_17298| Best HMM Match : RVT_1 (HMM E-Value=0.86)
Length = 312
Score = 31.5 bits (68), Expect = 0.33
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 169 LLVDARHNRLIDNTT--SLVAKAISTTSPNVYQIKTITGISRFHDVLAKYPDITRPAGDP 342
L + RH+ LI+ T + K + + ++ T RF DVL + + P DP
Sbjct: 204 LAIAIRHDSLIEGFTVGNSQIKMVMFADDLTFFVRNKTSYRRFFDVLKDFGSCSMPLNDP 263
Query: 343 TKRMVK 360
T+ VK
Sbjct: 264 TELGVK 269
>SB_33698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2
Query: 42 N*APRANSCSPGDP 1
N PR+NSCSPGDP
Sbjct: 18 NSRPRSNSCSPGDP 31
>SB_36841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -2
Query: 33 PRANSCSPGDP 1
PR+NSCSPGDP
Sbjct: 2 PRSNSCSPGDP 12
>SB_55243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -2
Query: 33 PRANSCSPGDP 1
PR+NSCSPGDP
Sbjct: 16 PRSNSCSPGDP 26
>SB_41354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 102 IKSTTQSKVQ*QINPTVSTYN*-APRANSCSPGDP 1
+K T + + I + T N A R+NSCSPGDP
Sbjct: 1 MKHFTDTLISANIQMLIKTANSKATRSNSCSPGDP 35
>SB_31592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -2
Query: 63 NPTVSTYN*AP-RANSCSPGDP 1
NP + T +P R+NSCSPGDP
Sbjct: 4 NPQLPTLAGSPFRSNSCSPGDP 25
>SB_38767| Best HMM Match : Filamin (HMM E-Value=0.034)
Length = 265
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2
Query: 36 APRANSCSPGDP 1
AP +NSCSPGDP
Sbjct: 139 APSSNSCSPGDP 150
>SB_19659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2
Query: 36 APRANSCSPGDP 1
AP +NSCSPGDP
Sbjct: 19 APTSNSCSPGDP 30
>SB_31086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 54 VSTYN*APRANSCSPGDP 1
+ +N R+NSCSPGDP
Sbjct: 17 IKLFNIGHRSNSCSPGDP 34
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 27.9 bits (59), Expect = 4.0
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +1
Query: 184 RHNRLIDNTTSLVAKAISTTSPNVYQIKTITGISRFHDVLAKYPDITRPAGDPTKRMVKH 363
RH+ + ++ +A+STT +++ G+ + L P+ RP T
Sbjct: 265 RHSTRLPTRKMMLTRALSTTPSTTPELRRCGGVLTAREGLIMSPNHPRPYPSDTHCKWVI 324
Query: 364 STVHYIRTTPGPAVVSQPRRLAPDR 438
S Y +VV + RL PDR
Sbjct: 325 SLPSYYHVI---SVVIETLRLEPDR 346
>SB_49082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -2
Query: 63 NPTVSTYN*APRANSCSPGDP 1
NPT TY ++NSCSPGDP
Sbjct: 8 NPT--TYRMFFQSNSCSPGDP 26
>SB_43538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 57 TVSTYN*APRANSCSPGDP 1
T+ + N R+NSCSPGDP
Sbjct: 7 TLISANIPKRSNSCSPGDP 25
>SB_42579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 54 VSTYN*APRANSCSPGDP 1
+ Y R+NSCSPGDP
Sbjct: 36 IKQYTRKKRSNSCSPGDP 53
>SB_40500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +3
Query: 3 DPPGCRNSHEG 35
DPPGCRNS EG
Sbjct: 17 DPPGCRNSIEG 27
>SB_34552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2
Query: 33 PRANSCSPGDP 1
P++NSCSPGDP
Sbjct: 30 PQSNSCSPGDP 40
>SB_10641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 267 DHYRYFPLSRRIGKISG 317
DHY Y+ LS RIGK G
Sbjct: 107 DHYLYYSLSYRIGKFVG 123
>SB_50060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2
Query: 48 TYN*APRANSCSPGDP 1
TY R+NSCSPGDP
Sbjct: 4 TYFMHTRSNSCSPGDP 19
>SB_44516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2
Query: 36 APRANSCSPGDP 1
A R+NSCSPGDP
Sbjct: 11 AVRSNSCSPGDP 22
>SB_59788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 60 PTVSTYN*APRANSCSPGDP 1
P V + R+NSCSPGDP
Sbjct: 100 PVVGLKHRDQRSNSCSPGDP 119
>SB_49256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 60 PTVSTYN*APRANSCSPGDP 1
P + Y R+NSCSPGDP
Sbjct: 2 PDDTLYVKLERSNSCSPGDP 21
>SB_48026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 57 TVSTYN*APRANSCSPGDP 1
T+ +N +NSCSPGDP
Sbjct: 8 TIPYHNPRTTSNSCSPGDP 26
>SB_42337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2
Query: 33 PRANSCSPGDP 1
P +NSCSPGDP
Sbjct: 9 PASNSCSPGDP 19
>SB_30336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2
Query: 33 PRANSCSPGDP 1
P +NSCSPGDP
Sbjct: 15 PTSNSCSPGDP 25
>SB_401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 331 AGDPTKRMVKHSTVHYIRTTPGPAVVSQPRRLAPDRLR 444
A D + R++KH Y+R + P R+ PD+L+
Sbjct: 175 AKDQSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 212
>SB_50800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 129 NNVSYHKTPIKSTTQSKVQ*QIN-PTVSTYN*APRANSCSPGDP 1
+ VS K T ++ Q IN P++S + R+NSCSPGDP
Sbjct: 61 HEVSAIKGKAPPTPWAQEQSVINQPSMSQH---ARSNSCSPGDP 101
>SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45)
Length = 727
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2
Query: 33 PRANSCSPGDP 1
P +NSCSPGDP
Sbjct: 46 PTSNSCSPGDP 56
>SB_40986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 147 YADNRLNNVSYHKTPIKSTT 88
Y +N NN+ ++KTP+ +TT
Sbjct: 11 YVNNNNNNIHHNKTPMTTTT 30
>SB_33203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -2
Query: 405 DGRPRSCANVMHGRMLDHALCWVSSRARDVRIFCQYVVKAG 283
DG P SC V + A +S +R V I+C V G
Sbjct: 2 DGAPSSCKEVYDRGLKKDAAYILSIESRSVEIYCHLTVIDG 42
>SB_32090| Best HMM Match : Rcd1 (HMM E-Value=6.2e-08)
Length = 119
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 331 AGDPTKRMVKHSTVHYIRTTPGPAVVSQPRRLAPDRLR 444
A D + R++KH Y+R + P R+ PD+L+
Sbjct: 41 AKDQSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 78
>SB_16436| Best HMM Match : DUF765 (HMM E-Value=9.2)
Length = 129
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2
Query: 33 PRANSCSPGDP 1
P +NSCSPGDP
Sbjct: 5 PTSNSCSPGDP 15
>SB_15537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2
Query: 36 APRANSCSPGDP 1
+P +NSCSPGDP
Sbjct: 23 SPGSNSCSPGDP 34
>SB_9854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2
Query: 33 PRANSCSPGDP 1
P +NSCSPGDP
Sbjct: 18 PASNSCSPGDP 28
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,247,045
Number of Sequences: 59808
Number of extensions: 287763
Number of successful extensions: 2132
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 2090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2132
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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