Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C16
(448 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB001636-1|BAA23987.1| 813|Homo sapiens ATP-dependent RNA helic... 32 1.0
AF090899-1|AAF24023.1| 83|Homo sapiens PRO0159 protein. 31 1.8
AC009957-1|AAX93056.1| 83|Homo sapiens unknown protein. 31 1.8
AB033062-1|BAA86550.2| 1840|Homo sapiens KIAA1236 protein protein. 31 1.8
AF464850-1|AAM90910.1| 757|Homo sapiens Smad-ubiquitin E3 ligas... 29 5.5
AB046845-1|BAB13451.1| 859|Homo sapiens KIAA1625 protein protein. 29 5.5
DQ139309-1|AAZ73614.1| 1104|Homo sapiens transient receptor pote... 29 7.2
AY328400-1|AAP92167.1| 1104|Homo sapiens transient receptor pote... 29 7.2
AY090109-1|AAM10446.1| 1104|Homo sapiens transient receptor pote... 29 7.2
D87957-1|BAA13508.1| 299|Homo sapiens protein ( Homo sapiens ge... 29 9.5
>AB001636-1|BAA23987.1| 813|Homo sapiens ATP-dependent RNA helicase
#46 protein.
Length = 813
Score = 31.9 bits (69), Expect = 1.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 286 RFHDVLAKYPD--ITRPAGDPTKRMVKHSTVHYIRTTPGP---AVVSQPRRLA 429
RF D+L ++ + G + H V Y+R+ PGP +QPRR+A
Sbjct: 145 RFTDILGRHQSFVLVGETGSGKTTQIPHRCVEYMRSLPGPKRGVACTQPRRVA 197
>AF090899-1|AAF24023.1| 83|Homo sapiens PRO0159 protein.
Length = 83
Score = 31.1 bits (67), Expect = 1.8
Identities = 13/60 (21%), Positives = 30/60 (50%)
Frame = +1
Query: 40 VISTYGWINLSLDFGLRRAFNWRFVIADVVKPIIGIDFLSFYNLLVDARHNRLIDNTTSL 219
V+ T W++ +D + + F ++ ++ + FL FY +++ H ++DN + L
Sbjct: 23 VLFTAVWVSKMIDISKEKEAAF-FKFHQIISLLLKVRFLHFYLIIISCIHTSIVDNNSLL 81
>AC009957-1|AAX93056.1| 83|Homo sapiens unknown protein.
Length = 83
Score = 31.1 bits (67), Expect = 1.8
Identities = 13/60 (21%), Positives = 30/60 (50%)
Frame = +1
Query: 40 VISTYGWINLSLDFGLRRAFNWRFVIADVVKPIIGIDFLSFYNLLVDARHNRLIDNTTSL 219
V+ T W++ +D + + F ++ ++ + FL FY +++ H ++DN + L
Sbjct: 23 VLFTAVWVSKMIDISKEKEAAF-FKFHQIISLLLKVRFLHFYLIIISCIHTSIVDNNSLL 81
>AB033062-1|BAA86550.2| 1840|Homo sapiens KIAA1236 protein protein.
Length = 1840
Score = 31.1 bits (67), Expect = 1.8
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 304 AKYPDITRPAGDPTKRMVKHSTVHYIRTTPGPAVVS--QPRRLAPDRLR 444
A + D+ P G P+ + ST R TPGPA + QP R PDR +
Sbjct: 105 ASHEDLDAPHGGPS--LAPPSTTTSSRDTPGPAGPAGRQPGRAGPDRTK 151
>AF464850-1|AAM90910.1| 757|Homo sapiens Smad-ubiquitin E3 ligase
Smurf1-beta protein.
Length = 757
Score = 29.5 bits (63), Expect = 5.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 235 STTSPNVYQIKTITGISRFHDVLAKYPDITRPAGD 339
+T VY + T TG+S +HD P T P GD
Sbjct: 244 TTVQGQVYFLHTQTGVSTWHDPRIPSPSGTIPGGD 278
>AB046845-1|BAB13451.1| 859|Homo sapiens KIAA1625 protein protein.
Length = 859
Score = 29.5 bits (63), Expect = 5.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 235 STTSPNVYQIKTITGISRFHDVLAKYPDITRPAGD 339
+T VY + T TG+S +HD P T P GD
Sbjct: 346 TTVQGQVYFLHTQTGVSTWHDPRIPSPSGTIPGGD 380
>DQ139309-1|AAZ73614.1| 1104|Homo sapiens transient receptor
potential subfamily M member 8 protein.
Length = 1104
Score = 29.1 bits (62), Expect = 7.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 100 NWRFVIADVVKPIIGIDFLSFYNLLVDARHNRLI 201
NW+ ++ + P++G F+SF VD +H +L+
Sbjct: 692 NWKIILCLFIIPLVGCGFVSFRKKPVD-KHKKLL 724
>AY328400-1|AAP92167.1| 1104|Homo sapiens transient receptor
potential subfamily M member 8 variant protein.
Length = 1104
Score = 29.1 bits (62), Expect = 7.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 100 NWRFVIADVVKPIIGIDFLSFYNLLVDARHNRLI 201
NW+ ++ + P++G F+SF VD +H +L+
Sbjct: 692 NWKIILCLFIIPLVGCGFVSFRKKPVD-KHKKLL 724
>AY090109-1|AAM10446.1| 1104|Homo sapiens transient receptor
potential cation channel protein protein.
Length = 1104
Score = 29.1 bits (62), Expect = 7.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 100 NWRFVIADVVKPIIGIDFLSFYNLLVDARHNRLI 201
NW+ ++ + P++G F+SF VD +H +L+
Sbjct: 692 NWKIILCLFIIPLVGCGFVSFRKKPVD-KHKKLL 724
>D87957-1|BAA13508.1| 299|Homo sapiens protein ( Homo sapiens gene
for protein involved in sexual development, complete
cds. ).
Length = 299
Score = 28.7 bits (61), Expect = 9.5
Identities = 18/78 (23%), Positives = 36/78 (46%)
Frame = +1
Query: 211 TSLVAKAISTTSPNVYQIKTITGISRFHDVLAKYPDITRPAGDPTKRMVKHSTVHYIRTT 390
T ++ K + + Y +T S +L K + + + +P+ R++KH Y+R +
Sbjct: 183 TFILQKILLDDTGLAYICQTYERFSHVAMILGKM--VLQLSKEPSARLLKHVVRCYLRLS 240
Query: 391 PGPAVVSQPRRLAPDRLR 444
P R+ PD+L+
Sbjct: 241 DNPRAREALRQCLPDQLK 258
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,905,461
Number of Sequences: 237096
Number of extensions: 1324984
Number of successful extensions: 2302
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2302
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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