Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C16
(448 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z46241-2|CAA86315.1| 144|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z46241-1|CAA86323.1| 462|Caenorhabditis elegans Hypothetical pr... 27 4.7
U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical p... 27 8.2
Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical pr... 27 8.2
AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome as... 27 8.2
AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog... 27 8.2
AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein. 27 8.2
>Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical
protein R06C7.8 protein.
Length = 987
Score = 28.7 bits (61), Expect = 2.0
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -3
Query: 242 VVEIALATNEVVLSISLLCRAS-TSKL*KERKSMPIIGLTTSAITKRQLKARRSPKSNDK 66
V E +LAT ++V S+LC T + +ER GL + + + S K +
Sbjct: 425 VPERSLATTQIVTDFSVLCDPDPTMTITQERPKKVSNGL--NVVYDEAAEPEESQKVEES 482
Query: 65 LIQP*VLITEPLVRIPAA 12
+QP +++ P+ + A
Sbjct: 483 EVQPEIVLVSPVTQTSPA 500
>Z46241-2|CAA86315.1| 144|Caenorhabditis elegans Hypothetical
protein C38D4.1b protein.
Length = 144
Score = 27.5 bits (58), Expect = 4.7
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 235 STTSPNVYQIKTITGISRFHDVL---AKYPDITRPAGDPTKRM 354
+TT+PNV + T S AK P+ T PAG+PTK +
Sbjct: 22 TTTTPNV-PVSAATNTSNVTAPAGNSAKSPNATAPAGNPTKNV 63
>Z46241-1|CAA86323.1| 462|Caenorhabditis elegans Hypothetical
protein C38D4.1a protein.
Length = 462
Score = 27.5 bits (58), Expect = 4.7
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 235 STTSPNVYQIKTITGISRFHDVL---AKYPDITRPAGDPTKRM 354
+TT+PNV + T S AK P+ T PAG+PTK +
Sbjct: 22 TTTTPNV-PVSAATNTSNVTAPAGNSAKSPNATAPAGNPTKNV 63
>U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical
protein F53B3.2 protein.
Length = 634
Score = 27.1 bits (57), Expect = 6.2
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +1
Query: 235 STTSPNVYQIKTITGISRFHDVLAK-----YPDITRPAGDPTKRMVKHSTVHYIR 384
+TTSP Q+KTI + + K +P TRP T + V ST +IR
Sbjct: 244 TTTSPPTTQVKTILPATEAQKIFTKPQYQIWPTTTRPM-TSTSQAVISSTEQFIR 297
>Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 153 KVYADNRLNNVSYHKTPIKSTTQSKVQ*QINPTVSTYN*APR-ANSCSPG 7
+ YA++ NN + K + STT++ P+ S+ N P A SPG
Sbjct: 652 RFYANHNNNNNNVSKNELDSTTETPPDPSRTPSTSSMNPVPSLAVPMSPG 701
>Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 153 KVYADNRLNNVSYHKTPIKSTTQSKVQ*QINPTVSTYN*APR-ANSCSPG 7
+ YA++ NN + K + STT++ P+ S+ N P A SPG
Sbjct: 652 RFYANHNNNNNNVSKNELDSTTETPPDPSRTPSTSSMNPVPSLAVPMSPG 701
>Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 153 KVYADNRLNNVSYHKTPIKSTTQSKVQ*QINPTVSTYN*APR-ANSCSPG 7
+ YA++ NN + K + STT++ P+ S+ N P A SPG
Sbjct: 652 RFYANHNNNNNNVSKNELDSTTETPPDPSRTPSTSSMNPVPSLAVPMSPG 701
>AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome
assembly factor protein6 protein.
Length = 720
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 156 KKVYADNRLNNVSYHKTPIKSTTQSKVQ*QINPTVS 49
K V DN N +H+TPI + +K+ P+V+
Sbjct: 117 KNVAVDNITPNFKFHETPIPISEDAKLSLMRQPSVA 152
>AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog
protein.
Length = 720
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 156 KKVYADNRLNNVSYHKTPIKSTTQSKVQ*QINPTVS 49
K V DN N +H+TPI + +K+ P+V+
Sbjct: 117 KNVAVDNITPNFKFHETPIPISEDAKLSLMRQPSVA 152
>AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein.
Length = 720
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 156 KKVYADNRLNNVSYHKTPIKSTTQSKVQ*QINPTVS 49
K V DN N +H+TPI + +K+ P+V+
Sbjct: 117 KNVAVDNITPNFKFHETPIPISEDAKLSLMRQPSVA 152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,336,353
Number of Sequences: 27780
Number of extensions: 201839
Number of successful extensions: 512
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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