Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C16
         (448 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02980.1 68414.m00268 cullin family protein similar to cullin...    31   0.27 
At1g70080.1 68414.m08063 terpene synthase/cyclase family protein...    28   3.3  
At2g42730.1 68415.m05292 F-box family protein contains F-box dom...    27   4.4  
At2g27220.1 68415.m03271 homeodomain-containing protein                27   4.4  
At5g64110.1 68418.m08051 peroxidase, putative similar to peroxid...    27   5.8  
At5g12980.1 68418.m01488 rcd1-like cell differentiation protein,...    27   5.8  
At2g42380.2 68415.m05245 bZIP transcription factor family protein      27   7.6  
At2g42380.1 68415.m05244 bZIP transcription factor family protein      27   7.6  
At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel...    27   7.6  

>At1g02980.1 68414.m00268 cullin family protein similar to cullin 1
           [Homo sapiens] GI:3139077; contains Pfam profile
           PF00888: Cullin family
          Length = 742

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 277 GISRFHDVLAKYPDITRPAGDPTKRMVKHSTVHYIRTTPGPAVVSQ 414
           G+++   +L + PD   P  DP +RM  ++TVH + T   P   SQ
Sbjct: 18  GVAKLQKILEEVPD--EPPFDPVQRMQLYTTVHNLCTQKPPNDYSQ 61


>At1g70080.1 68414.m08063 terpene synthase/cyclase family protein
           similar to (+)-delta-cadinene synthase [Gossypium
           hirsutum][GI:8389329], sesquiterpene synthases
           [GI:11934937][Lycopersicon hirsutum],
           [GI:11934933][Lycopersicon esculentum]; contains Pfam
           profile: PF01397: Terpene synthase family
          Length = 611

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 360 LDHALCWVSSRARDVRIFCQYVVKAGNTCNGLN 262
           L HAL +V SR RD     +  +K G+ CNG+N
Sbjct: 495 LTHAL-FVKSRLRDDIATYKEEMKRGDVCNGIN 526


>At2g42730.1 68415.m05292 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 737

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 130 KPIIGIDFLSFYNLLVDARHNRLIDNTTSLVAKAISTTS 246
           K + G+   S  +  VDAR NRL D  TSL  + +S TS
Sbjct: 508 KSVKGVKNSSKVSRFVDAR-NRLKDAPTSLACEVVSKTS 545


>At2g27220.1 68415.m03271 homeodomain-containing protein 
          Length = 431

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 294 RRIGKISGHHAPCWRPNKAHGQAFYRALHS 383
           +++GK++ HH+  WRP +   +     L S
Sbjct: 216 KKLGKMAHHHSNAWRPQRGLPEKVVSVLRS 245


>At5g64110.1 68418.m08051 peroxidase, putative similar to peroxidase
           ATP3a [Arabidopsis thaliana] gi|1546698|emb|CAA67340
          Length = 330

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 293 TTYWQNIRTSRALLETQQSAWSSI 364
           T+Y  N++  R LLE+ Q  W+++
Sbjct: 256 TSYLNNLKNGRGLLESDQVLWTNL 279


>At5g12980.1 68418.m01488 rcd1-like cell differentiation protein,
           putative similar to protein involved in sexual
           development [Schizosaccharomyces pombe] GI:1620896;
           contains Pfam profile PF04078: Cell differentiation
           family, Rcd1-like
          Length = 311

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 319 ITRPAGDPTKRMVKHSTVHYIRTTPGPAVVSQPRRLAPDRLR 444
           +T  A  P+ R++KH    Y+R T  P          PD LR
Sbjct: 229 VTSLAEGPSARLLKHIIRCYLRLTDNPRACDALGSCLPDLLR 270


>At2g42380.2 68415.m05245 bZIP transcription factor family protein
          Length = 321

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 7   PRAAGIRTRGSVISTYGWINLSLDFGLRRAFNWRFVIADVV 129
           P A  + T  + +    W++  LDF   R  N R  I+D +
Sbjct: 29  PTATAVATATTTVQNPSWVDEFLDFSASRRGNHRRSISDSI 69


>At2g42380.1 68415.m05244 bZIP transcription factor family protein
          Length = 310

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 7   PRAAGIRTRGSVISTYGWINLSLDFGLRRAFNWRFVIADVV 129
           P A  + T  + +    W++  LDF   R  N R  I+D +
Sbjct: 29  PTATAVATATTTVQNPSWVDEFLDFSASRRGNHRRSISDSI 69


>At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel
           (CNGC10) (ACBK1) almost identical to CaM-regulated
           potassium ion channel (ACBK1) GI:8515883 from
           [Arabidopsis thaliana]; contains Pfam domain, PF00520:
           Ion transport protein
          Length = 706

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +1

Query: 100 NWRFVIADVVKPIIGIDFLSFYNLLVD-ARHNRLIDNTTSLVAKAISTTSPNVYQIKTI 273
           NW  +        + ID L FY  +VD ARH   +D+   + A  + T     Y I  +
Sbjct: 73  NWNKIFLFACVVALAIDPLFFYIPIVDSARHCLTLDSKLEIAASLLRTLIDAFYIIHIV 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,694,716
Number of Sequences: 28952
Number of extensions: 185308
Number of successful extensions: 508
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)