Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C15
(339 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 93 1e-20
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 49 2e-07
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 44 8e-06
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 32 0.021
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 31 0.036
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 29 0.19
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 28 0.34
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 28 0.45
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 27 0.78
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 0.78
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 25 2.4
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo... 25 2.4
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 2.4
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 4.2
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 24 7.3
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 24 7.3
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 24 7.3
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 24 7.3
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 7.3
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 24 7.3
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 23 9.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 92.7 bits (220), Expect = 1e-20
Identities = 38/82 (46%), Positives = 57/82 (69%)
Frame = +1
Query: 91 NMRRPNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEA 270
N+ + +W + +L PF KDFY H++V +RS EV +YR + E+ V G+ VP P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 271 NFPDYVCQAIKSMGYKDPTPIQ 336
FP+YV + +K +G++ PTPIQ
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQ 149
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 49.2 bits (112), Expect = 2e-07
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 118 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHE-VTVSGVEVPNPIEHFEEANFPDYVCQ 294
++ + F KDFY + + + SP EV++ R + + + G++ P P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 295 AIKSMGYKDPTPIQA 339
I S+GY+ PT IQA
Sbjct: 432 VINSLGYEKPTSIQA 446
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 43.6 bits (98), Expect = 8e-06
Identities = 14/45 (31%), Positives = 30/45 (66%)
Frame = +1
Query: 202 RNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
+ + +++ G ++PNP+ ++EEA P + + +K + YK+P+ IQ
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQ 276
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 32.3 bits (70), Expect = 0.021
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 259 FEEANFPDYVCQAIKSMGYKDPTPIQ 336
F+E D +C+A + +G+K PTPIQ
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQ 73
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 31.5 bits (68), Expect = 0.036
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 217 VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
V VSG ++ P+ F ++ Q IK GY PTP+Q
Sbjct: 158 VEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQ 196
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 29.1 bits (62), Expect = 0.19
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = -1
Query: 300 YCLTHIIWKVCLFKMFNRIRYFNSTNSDFVFVSIVLYFIW 181
+ ++++I + L ++F+ +R+ N+ ++F SIV + W
Sbjct: 856 WAVSNLILAIVLIQVFDGMRFINNGYMKYIFWSIVAFTAW 895
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 28.3 bits (60), Expect = 0.34
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 214 EVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQA 339
E+T S E N + FEE N + + + I + GY+ P+ +Q+
Sbjct: 10 ELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQS 49
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.9 bits (59), Expect = 0.45
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 187 EVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
E ED R + V ++ + IE F + + + +AIK MG++ T IQ
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQ 116
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 0.78
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +1
Query: 199 YRNKHEVTVSGVEVPN---PIEHFEEANFPDYVCQAIKSMGYKDPTPIQA 339
Y KH ++ + + PI F+E + + + +K+ YK+PTPIQA
Sbjct: 146 YIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQA 193
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 0.78
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 181 PYEVEDYRNKHEVTVSGVE-VPNPI 252
PYE++ YRNKH +S + +PN +
Sbjct: 253 PYEIQVYRNKHWFPISTEDLLPNDV 277
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 2.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 259 FEEANFPDYVCQAIKSMGYKDPTPIQA 339
F+ N ++ A+ + G+K TP+QA
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQA 29
>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 2.4
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 163 SVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANF-PDYVCQAIKSMGYKD 321
S L R Y E+Y + + N +EH + F D + Q +++GY +
Sbjct: 27 SALGRRGYHSENYETSKISGKKALILENALEHVPQLGFTEDAIVQGGQALGYSN 80
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 2.4
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 160 KSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYK 318
+ D P +DYR+ +T S + N + +E + Y+CQ + S+ +
Sbjct: 919 REAFDGRPDFSKDYRSLLSITQSCNTLSNFYRNAQEKSLHAYLCQLLHSINLR 971
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 24.6 bits (51), Expect = 4.2
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 121 SLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNP 249
S+ +NKD N K RS ++ + K + S VE+ P
Sbjct: 744 SVNDYNKDETNFRKHNAKRSKTDIRSWFEKKQPIDSDVEISEP 786
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 23.8 bits (49), Expect = 7.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 142 DFYNPHKSVLDRSPYEVEDY 201
D Y PH +LDR + +E Y
Sbjct: 281 DLYFPHTQILDRLNWILEKY 300
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 23.8 bits (49), Expect = 7.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 145 FYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHF 261
F NP + + R +R + VSG VP PIE+F
Sbjct: 236 FSNPATNGMLRGDKPDLLHRAQSRAFVSGEGVPGPIEYF 274
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 23.8 bits (49), Expect = 7.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 264 RGKLSRLCVSSNKKYGLQRSYPYT 335
+ K++ +C+S + KY L P+T
Sbjct: 383 QSKVTSICLSKDSKYALTNLEPHT 406
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 23.8 bits (49), Expect = 7.3
Identities = 12/55 (21%), Positives = 27/55 (49%)
Frame = +1
Query: 163 SVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPT 327
+ +R+PY + + + ++ + +P+P + +E + Y A S + DPT
Sbjct: 449 AAFERAPYMLSELLDTLNISFTKSSIPSPQDPVQELHSAMYALYAKDS--WSDPT 501
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 166 VLDRSPYEVEDYRNKHEVTVSGVEVPNPIE 255
+LD+ +++D RNK V+ S V P+ ++
Sbjct: 130 ILDKQTEDIDDDRNKSAVSKSLVRHPHRLK 159
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 256 HFEEANFPDYVCQAIKSMGYKDPTPIQ 336
+F+ + +AI G+K PTPIQ
Sbjct: 70 NFQSMGLNQTLLRAIFKKGFKAPTPIQ 96
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 163 SVLDRSPYEVEDYRNKHEVTVSGVEVPNPIE 255
++ D S + + + V++SGVE P P+E
Sbjct: 49 TIWDSSKFWKQFFEASANVSLSGVEEPVPVE 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.423
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,290,290
Number of Sequences: 5004
Number of extensions: 24246
Number of successful extensions: 132
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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