Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C15
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 82 1e-16
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 72 1e-13
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572... 69 9e-13
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 56 9e-09
08_01_0397 - 3509186-3510291,3510322-3512335 53 5e-08
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 53 7e-08
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 52 2e-07
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 51 3e-07
02_01_0765 - 5694535-5694644,5695039-5696550,5697229-5697390,569... 41 3e-04
07_03_1500 + 27001842-27002058,27002144-27002283,27002458-270025... 40 5e-04
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244... 39 9e-04
03_05_0865 - 28365430-28367640 39 9e-04
02_01_0381 - 2764331-2764342,2768966-2769907 38 0.002
06_03_1255 + 28780181-28781172,28782065-28782932 37 0.004
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 34 0.033
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 32 0.100
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 30 0.53
01_07_0192 - 41888998-41890632 29 1.2
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 28 1.6
10_01_0003 + 46158-46428,46588-46706,46819-46928,48977-49415,495... 27 3.8
06_03_1265 + 28847782-28849803 27 3.8
07_01_1218 - 11633829-11634628,11634713-11635050,11635349-116354... 26 6.6
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096... 26 8.7
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 81.8 bits (193), Expect = 1e-16
Identities = 37/79 (46%), Positives = 50/79 (63%)
Frame = +1
Query: 103 PNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPD 282
P D SL PF K+FY +V S +V YR + ++TV G +VP P+ +F+EANFPD
Sbjct: 106 PKPDFRSLIPFEKNFYVECPAVQAMSDMDVSQYRRQRDITVEGHDVPKPVRYFQEANFPD 165
Query: 283 YVCQAIKSMGYKDPTPIQA 339
Y QAI G+ +PTPIQ+
Sbjct: 166 YCMQAIAKSGFVEPTPIQS 184
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 72.1 bits (169), Expect = 1e-13
Identities = 32/72 (44%), Positives = 43/72 (59%)
Frame = +1
Query: 124 LQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIK 303
L F K+FY SV + EVE YR + E+TV G +VP P+ F + FP+YV Q I
Sbjct: 48 LPRFEKNFYVESPSVAGMTEEEVEAYRRRREITVEGRDVPKPVREFRDVGFPEYVLQEIT 107
Query: 304 SMGYKDPTPIQA 339
G+ +PTPIQ+
Sbjct: 108 KAGFVEPTPIQS 119
>03_02_0758 +
10954268-10954841,10955988-10957145,10957176-10957216,
10957412-10957448,10957534-10957954,10958201-10958234
Length = 754
Score = 68.9 bits (161), Expect = 9e-13
Identities = 32/74 (43%), Positives = 41/74 (55%)
Frame = +1
Query: 115 SLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQ 294
++ +PFNKDFY SV S EV DY + VSG +VP PI+ F + FP +
Sbjct: 173 TIEYEPFNKDFYEEKPSVSGMSEQEVADYMKSLAIRVSGFDVPRPIKSFADCGFPVQLMN 232
Query: 295 AIKSMGYKDPTPIQ 336
AI GY+ PT IQ
Sbjct: 233 AIAKQGYEKPTTIQ 246
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 55.6 bits (128), Expect = 9e-09
Identities = 24/49 (48%), Positives = 31/49 (63%)
Frame = +1
Query: 193 EDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQA 339
E YR++HE+TV G VP PI FE FP + + I+ G+ PTPIQA
Sbjct: 130 EAYRHRHEITVVGDNVPAPITSFETGGFPPEILKEIQRAGFSSPTPIQA 178
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 53.2 bits (122), Expect = 5e-08
Identities = 25/74 (33%), Positives = 40/74 (54%)
Frame = +1
Query: 118 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQA 297
+ QPF K+FY K + + EV YR + E+ V G +VP PI+ + ++ +
Sbjct: 379 IDYQPFRKNFYIEVKDITKMAAEEVAAYRKQLELKVHGKDVPKPIKTWVQSGLTSKLLDT 438
Query: 298 IKSMGYKDPTPIQA 339
IK +G++ P IQA
Sbjct: 439 IKKLGFEKPMSIQA 452
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 52.8 bits (121), Expect = 7e-08
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +1
Query: 118 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQA 297
+ QPF K+ Y K + + EV YR E+ V G +VP PI+ + ++ +
Sbjct: 240 IEYQPFRKNLYIEVKDITMMTGEEVATYRKNLELKVHGKDVPKPIKTWVQSGLTSKLLDT 299
Query: 298 IKSMGYKDPTPIQA 339
IK +G++ P PIQA
Sbjct: 300 IKKLGFEKPMPIQA 313
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 51.6 bits (118), Expect = 2e-07
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = +1
Query: 193 EDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQA 339
E YR KHE+T+ G E P P F+ FP + + ++ G+ PTPIQA
Sbjct: 160 EAYRAKHEITIVGNEAPAPFMTFQSTGFPPEILREVQQAGFSAPTPIQA 208
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 50.8 bits (116), Expect = 3e-07
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +1
Query: 199 YRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQA 339
YR HEVT G VP P FE FP + Q I + G+ +PTPIQA
Sbjct: 586 YRQHHEVTAVGENVPPPFMTFEATGFPPEILQEIHAAGFLNPTPIQA 632
>02_01_0765 -
5694535-5694644,5695039-5696550,5697229-5697390,
5698015-5698057
Length = 608
Score = 40.7 bits (91), Expect = 3e-04
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = +1
Query: 187 EVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
++ R+K ++ V G +VP+PI F + P+ + +++ GY PTP+Q
Sbjct: 160 QIASLRSKLDICVKGEDVPDPIMCFSSSGLPEKLVLNLEAAGYVMPTPVQ 209
>07_03_1500 +
27001842-27002058,27002144-27002283,27002458-27002549,
27002680-27002776,27002871-27002951,27003031-27003263,
27003876-27004070,27004149-27004239,27004324-27004446,
27004542-27004692,27005060-27005262
Length = 540
Score = 39.9 bits (89), Expect = 5e-04
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +1
Query: 202 RNKHEVTVSGVEVPNPIEHFEEA----NFPDYVCQAIKSMGYKDPTPIQ 336
R K ++ +SG VP P+E+FEE Y+ + +G+++PTPIQ
Sbjct: 125 RKKFDIHISGQNVPAPLENFEELVSRYGCDSYLVGNLSKLGFQEPTPIQ 173
>06_03_0674 +
23422004-23422552,23423295-23423369,23424360-23424443,
23424749-23424991,23425348-23425515,23425608-23425727,
23426372-23427016
Length = 627
Score = 39.1 bits (87), Expect = 9e-04
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 217 VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
V VSG +VP P + FE A + V + + GY+ PTP+Q
Sbjct: 72 VEVSGEDVPPPADGFEAAGLVEAVLRNVARCGYESPTPVQ 111
>03_05_0865 - 28365430-28367640
Length = 736
Score = 39.1 bits (87), Expect = 9e-04
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +1
Query: 160 KSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
KS+ + + + +R ++ G +VP P+ + E+ + +A++ GYK+P+PIQ
Sbjct: 284 KSLDEMTERDWRIFREDFNISYKGSKVPRPMRKWSESKLGTELLRAVEKAGYKEPSPIQ 342
>02_01_0381 - 2764331-2764342,2768966-2769907
Length = 317
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 187 EVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
+ ++ R K + V G +VP P F + P+ + + ++ G PTPIQ
Sbjct: 160 KADELRRKWHILVDGDDVPPPARDFRDLRLPEPMLRKLREKGIVQPTPIQ 209
>06_03_1255 + 28780181-28781172,28782065-28782932
Length = 619
Score = 37.1 bits (82), Expect = 0.004
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 169 LDRSPYEVED-YRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
L R P D R + V G +VP P F + P+ + +A++ G + PTPIQ
Sbjct: 144 LRRMPRSRADALRRSWHILVDGDDVPPPSRSFGDLRLPEPILRALRGKGIEKPTPIQ 200
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 33.9 bits (74), Expect = 0.033
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Frame = +1
Query: 100 RPNWDSLSLQP---FNKDFYNPHKSVLDRSPYEVE-DYRNKHEVTVSGVEVPNPIEHFEE 267
RP WD +P N + + D + + D V SG +VP P+ F E
Sbjct: 182 RPGWDRRDREPNPFANSEAEEATEVDFDTANTGINFDAYEDIPVETSGHDVPPPVNTFAE 241
Query: 268 ANFPDYVCQAIKSMGYKDPTPIQ 336
+ D + + I+ Y PTP+Q
Sbjct: 242 IDLGDALNENIRRCKYVKPTPVQ 264
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 32.3 bits (70), Expect = 0.100
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Frame = +1
Query: 91 NMRRPNWDSLSLQPFNKDFYNPHKSVLD----RSPYEVEDYRNKHEVTVSGVEVPNPIEH 258
N R WD +P F N + +D + E Y + V SG +VP P
Sbjct: 268 NSRPGGWDRRDREP--DPFANSEAAEVDFEGENTGINFEAYEDI-PVETSGHDVPPPANT 324
Query: 259 FEEANFPDYVCQAIKSMGYKDPTPIQ 336
F E + D + + I+ Y PTP+Q
Sbjct: 325 FAEIDLGDALNENIRRCKYVKPTPVQ 350
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 29.9 bits (64), Expect = 0.53
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 217 VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
V SG EVP P+ F E + + I+ Y PTP+Q
Sbjct: 143 VETSGREVPPPVGTFAEIDLGQALNDNIRRCKYVRPTPVQ 182
>01_07_0192 - 41888998-41890632
Length = 544
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 226 SGVEVPNP--IEHFEEANFPDYVCQAIKSMGYKD 321
SGV NP ++HF A+FP+YV A ++ ++D
Sbjct: 84 SGVATANPAVVDHFLRASFPNYVKGARFAVPFED 117
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 259 FEEANFPDYVCQAIKSMGYKDPTPIQA 339
F E N + +A +++GY+ PTPIQA
Sbjct: 196 FLELNLSRPLLRACEALGYQKPTPIQA 222
>10_01_0003 +
46158-46428,46588-46706,46819-46928,48977-49415,
49511-49633,49805-50106,50143-50350,50729-51448
Length = 763
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 151 NPHKSVLDRS--PYEVEDYRNKHEVTVSGVEVPNPIEHFEEAN 273
N +S+LD YE + +++E+T+S PN E +AN
Sbjct: 234 NNAESILDEGYISYEAQTPADRYEITISDNGQPNDYESLVDAN 276
>06_03_1265 + 28847782-28849803
Length = 673
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 65 PREISLVGKICDALIGIRCRSNHLTKIFIILINQSW 172
PR +S V K C+ L+G RS LT+ +++I++SW
Sbjct: 414 PRIVSFVAKYCNQLLGDPYRS-VLTQ--VLVIHRSW 446
>07_01_1218 -
11633829-11634628,11634713-11635050,11635349-11635445,
11635482-11635725,11636114-11636122
Length = 495
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 136 NKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIE 255
NK YN +++ R+P + E Y N ++ EV P+E
Sbjct: 137 NKHKYNELGNIIPRTPTDQEKYGNNSSYILNIEEVILPLE 176
>04_04_0476 -
25508952-25509004,25509245-25509326,25509453-25509611,
25509702-25509767,25509898-25510067,25510172-25510262,
25510331-25510410,25510887-25511003,25511092-25511218,
25511685-25511865,25511978-25512366,25512959-25513135,
25513306-25513500,25513844-25514031,25514192-25514500,
25514592-25514637
Length = 809
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +1
Query: 295 AIKSMGYKDPTPIQ 336
A++ +G+K+PTPIQ
Sbjct: 156 AVRRLGFKEPTPIQ 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.423
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,793,307
Number of Sequences: 37544
Number of extensions: 135091
Number of successful extensions: 330
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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