Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C15
         (339 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)                  58   2e-09
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   7e-09
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)                  49   1e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)            48   3e-06
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               47   3e-06
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)                  44   4e-05
SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         43   7e-05
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.026
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)                34   0.026
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.18 
SB_54371| Best HMM Match : ChaB (HMM E-Value=3.9)                      28   1.7  
SB_56317| Best HMM Match : DUF1273 (HMM E-Value=1.2)                   27   2.9  
SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)         27   5.1  
SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_37546| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_36735| Best HMM Match : Sin_N (HMM E-Value=0.082)                   27   5.1  
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_49046| Best HMM Match : BA14K (HMM E-Value=6.4)                     26   9.0  
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  

>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
          Length = 690

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 25/55 (45%), Positives = 35/55 (63%)
 Frame = +1

Query: 175 RSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQA 339
           R  +EV+ YR   ++TV+G  VP P+  FEE+ FPDY+    K  G+ +PT IQA
Sbjct: 57  RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQA 111


>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 25/78 (32%), Positives = 38/78 (48%)
 Frame = +1

Query: 103 PNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPD 282
           P    +  +PFNK+FY  H  +  +S  E++D R K  + VSG     P   F    F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526

Query: 283 YVCQAIKSMGYKDPTPIQ 336
            +  +I+ + Y  PT IQ
Sbjct: 527 QMMASIRKLEYTQPTQIQ 544


>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
          Length = 428

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 18/46 (39%), Positives = 28/46 (60%)
 Frame = +1

Query: 199 YRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
           +R    ++  G  +P PI  ++EA  PD + + +  +GYKDPTPIQ
Sbjct: 83  FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQ 128


>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
          Length = 1058

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = +1

Query: 199 YRNKHEVTVSGVEVPNPIEHF----EEANFPDYVCQAIKSMGYKDPTPIQ 336
           +R++  + V G +VP+P+E F    E   FPDY+   ++  GY  PTPIQ
Sbjct: 141 FRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQ 190


>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 127 QPFNKDFYNPHKSVLDRSPYEVEDYRNKHE-VTVSGVEVPNPIEHFEEANFPDYVCQAIK 303
           QPF KDFY     +   +P E +++R   E + V G   P P++ + +      +   +K
Sbjct: 62  QPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILDVLK 121

Query: 304 SMGYKDPTPIQA 339
              Y+ PTPIQA
Sbjct: 122 KNSYEKPTPIQA 133


>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
          Length = 500

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 19/63 (30%), Positives = 34/63 (53%)
 Frame = +1

Query: 148 YNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPT 327
           Y  H ++   +  +V+  R+K E+ V G  V +P+  F   +F + + + + + GY  PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220

Query: 328 PIQ 336
           PIQ
Sbjct: 221 PIQ 223


>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = +1

Query: 133 FNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMG 312
           F   +Y+ ++ V   S   V++ R K+ + + G + P PIE F + N P  +   +    
Sbjct: 32  FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91

Query: 313 YKDPTPIQ 336
           ++ PTPIQ
Sbjct: 92  FQVPTPIQ 99


>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 34.3 bits (75), Expect = 0.026
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 214 EVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
           EV VSG      I  FEEAN  +     ++   YK PTP+Q
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQ 738


>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
          Length = 185

 Score = 34.3 bits (75), Expect = 0.026
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 214 EVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
           EV VSG      I  FEEAN  +     ++   YK PTP+Q
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQ 161


>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 223 VSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
           VSG   P  I  F E  F + +   I   GY+ PTP+Q
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQ 506


>SB_54371| Best HMM Match : ChaB (HMM E-Value=3.9)
          Length = 557

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +1

Query: 88  QNMRRPNWD-SLSLQPFNKD-FYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHF 261
           +N+ R +++ +L +   ++D F    +S +    Y  +D R +    ++GVE P  ++HF
Sbjct: 154 KNIMRKHFNKALKMSKHDEDQFQKAQESHICNKEYTKKDTRVRDHCHITGVEFPVTVKHF 213

Query: 262 EEANFPDYVCQAIKSMGYKDPTPI 333
            +    + +   + S     P P+
Sbjct: 214 NKVEKQNRININVFSYDNAQPYPM 237


>SB_56317| Best HMM Match : DUF1273 (HMM E-Value=1.2)
          Length = 475

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +1

Query: 145 FYNPHKSVLDRSPYEVE--DYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYK 318
           F+  H +   ++P  V+  D     E+  SGV+ P  ++HF      + +   + S   K
Sbjct: 246 FHTRHLNPQSKNPQRVKKSDKALVKELDYSGVDFPLTVKHFNRIEKQNRININVLSYDNK 305

Query: 319 DPTPI 333
            P PI
Sbjct: 306 QPYPI 310


>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
          Length = 2435

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +1

Query: 88  QNMRRPNWD-SLSLQPFNKDFYNPHKS-VLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHF 261
           +NM + + D  +  +  N+D  +   +  +DR+   + ++  K E T+   ++P+P++ F
Sbjct: 472 ENMSKTSIDIPVKAKTVNQDTLDDEDNDFIDRNTERIREWAEKVESTMLTEQLPSPVDPF 531

Query: 262 E 264
           E
Sbjct: 532 E 532


>SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1604

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 203 ETNTKSLLVELKYLILLNILKRQTFQIMCVKQ*KVWVTKILPLY 334
           ETN+   L+    L L N+ K      MC K+ ++  T    +Y
Sbjct: 623 ETNSNGYLIITNELSLTNVTKEDAGSYMCEKKNRIGATAQASIY 666


>SB_37546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 190 VEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMG 312
           + +++NK EV    +E  NP+EH +    P+ + +  KS G
Sbjct: 83  ITEFKNKFEVFAVEIEDINPLEHIKAT--PERLYKIQKSTG 121


>SB_36735| Best HMM Match : Sin_N (HMM E-Value=0.082)
          Length = 546

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 178 SPYEVEDYRNKHEVTVSGVEVPNPIEHFEEA--NFPDYVCQAI 300
           +P EVE++ +  ++ V+   +    EHF+E      D+VC+ +
Sbjct: 449 TPMEVEEFVDTGDIHVTKQPLSADSEHFQEVFKRLQDFVCEKL 491


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 250 IEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
           I  FE+ +  + +   +   GYK PTP+Q
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQ 902


>SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 103 PNWDSLSLQPFNKDFYNPHKSVLDRSPYE 189
           P W S S  P+N+ +YN    VL R  +E
Sbjct: 51  PRWSSNS--PYNESYYNSLAVVLQRRDWE 77


>SB_49046| Best HMM Match : BA14K (HMM E-Value=6.4)
          Length = 120

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 103 PNWDSLSLQPFNKDFYNPHKSVLDRSPYE 189
           P W S S  P+N+ +YN    VL R  +E
Sbjct: 13  PRWSSNS--PYNESYYNSLAVVLQRRDWE 39


>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 100 RPNWDSLSLQPFNKDFYNPHKSVLDRSP 183
           RP   S  L PF    YNP  S L RSP
Sbjct: 267 RPQLPSSHLLPFIAHQYNPTISYLHRSP 294


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.134    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,261,336
Number of Sequences: 59808
Number of extensions: 170190
Number of successful extensions: 1952
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1949
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)