Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C15
(339 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 77 3e-15
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 68 1e-12
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 68 1e-12
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 64 2e-11
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 54 2e-08
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 54 2e-08
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 54 2e-08
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 54 2e-08
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 53 4e-08
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 52 7e-08
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 45 1e-05
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 42 1e-04
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 39 7e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 38 0.002
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 36 0.007
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 34 0.021
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 31 0.15
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 31 0.15
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 31 0.15
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 31 0.20
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 31 0.20
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 31 0.20
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 31 0.20
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 31 0.20
At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xy... 28 1.4
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 28 1.8
At4g31540.1 68417.m04478 exocyst subunit EXO70 family protein (E... 27 2.4
At2g26160.1 68415.m03139 F-box family protein contains F-box dom... 27 4.2
At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containi... 26 5.6
At2g39710.1 68415.m04872 aspartyl protease family protein contai... 26 7.4
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 26 7.4
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 26 7.4
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 26 7.4
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 26 7.4
At5g50220.1 68418.m06220 F-box family protein contains F-box dom... 25 9.7
At4g36100.1 68417.m05138 expressed protein contains Pfam domain,... 25 9.7
At4g34080.1 68417.m04835 expressed protein contains Pfam profile... 25 9.7
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 25 9.7
At2g45260.1 68415.m05634 expressed protein contains Pfam profile... 25 9.7
At1g77360.1 68414.m09009 pentatricopeptide (PPR) repeat-containi... 25 9.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 77.0 bits (181), Expect = 3e-15
Identities = 31/72 (43%), Positives = 46/72 (63%)
Frame = +1
Query: 124 LQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIK 303
L PF K+FY +V + EVE+YR E+TV G ++P P++ F + FPDYV + +K
Sbjct: 56 LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVK 115
Query: 304 SMGYKDPTPIQA 339
G+ +PTPIQ+
Sbjct: 116 KAGFTEPTPIQS 127
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 68.1 bits (159), Expect = 1e-12
Identities = 29/73 (39%), Positives = 48/73 (65%)
Frame = +1
Query: 121 SLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAI 300
+L F K+FY +V + +V YR + +++V G +VP P++ F++ANFPD + +AI
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 301 KSMGYKDPTPIQA 339
+G+ +PTPIQA
Sbjct: 181 AKLGFTEPTPIQA 193
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 68.1 bits (159), Expect = 1e-12
Identities = 29/73 (39%), Positives = 48/73 (65%)
Frame = +1
Query: 121 SLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAI 300
+L F K+FY +V + +V YR + +++V G +VP P++ F++ANFPD + +AI
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 301 KSMGYKDPTPIQA 339
+G+ +PTPIQA
Sbjct: 181 AKLGFTEPTPIQA 193
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 64.1 bits (149), Expect = 2e-11
Identities = 28/74 (37%), Positives = 41/74 (55%)
Frame = +1
Query: 115 SLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQ 294
S+ +P NKDFY +S+ + E DYR + + VSG +V P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 295 AIKSMGYKDPTPIQ 336
AIK Y+ PT IQ
Sbjct: 242 AIKKQAYEKPTAIQ 255
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 54.4 bits (125), Expect = 2e-08
Identities = 26/62 (41%), Positives = 34/62 (54%)
Frame = +1
Query: 154 PHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPI 333
P S S E Y +HE+TVSG +VP P+ FE FP + + + S G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 334 QA 339
QA
Sbjct: 185 QA 186
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 54.4 bits (125), Expect = 2e-08
Identities = 26/62 (41%), Positives = 34/62 (54%)
Frame = +1
Query: 154 PHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPI 333
P S S E Y +HE+TVSG +VP P+ FE FP + + + S G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 334 QA 339
QA
Sbjct: 185 QA 186
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 54.4 bits (125), Expect = 2e-08
Identities = 26/62 (41%), Positives = 34/62 (54%)
Frame = +1
Query: 154 PHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPI 333
P S S E Y +HE+TVSG +VP P+ FE FP + + + S G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 334 QA 339
QA
Sbjct: 185 QA 186
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 54.0 bits (124), Expect = 2e-08
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 136 NKDFYNPHKSVLDRSPY--EVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSM 309
NK PH P+ VE YR +HEVT +G +P P FE + P + + + S
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEIYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSA 453
Query: 310 GYKDPTPIQA 339
G+ PTPIQA
Sbjct: 454 GFPSPTPIQA 463
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 53.2 bits (122), Expect = 4e-08
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +1
Query: 118 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQA 297
+ +PF K+FY K + + EV YR + E+ V G +VP PI+ + + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 298 IKSMGYKDPTPIQ 336
+K + Y+ P PIQ
Sbjct: 544 MKKLNYEKPMPIQ 556
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 52.4 bits (120), Expect = 7e-08
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +1
Query: 118 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQA 297
+ +PF K+FY K + + V YR + E+ V G +VP PI+ + + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 298 IKSMGYKDPTPIQA 339
+K + Y+ P PIQA
Sbjct: 411 LKKLNYEKPMPIQA 424
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 45.2 bits (102), Expect = 1e-05
Identities = 20/64 (31%), Positives = 36/64 (56%)
Frame = +1
Query: 145 FYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDP 324
++ P V S +++ R + +TV+G ++P PI++F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 325 TPIQ 336
TPIQ
Sbjct: 121 TPIQ 124
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 202 RNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
R + + V+G ++P PI++F++ FP V +K G PTPIQ
Sbjct: 129 RKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQ 173
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 39.1 bits (87), Expect = 7e-04
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 199 YRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
+R ++ G +P P+ +EE+ + +A++ GYK P+PIQ
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQ 340
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 37.9 bits (84), Expect = 0.002
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +1
Query: 136 NKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANF----PDYVCQAIK 303
N+ NP K L+R R ++ + VSG +P P++ F E + Y+ + +
Sbjct: 99 NEIVENPKKE-LNRQMERDALSRKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLA 157
Query: 304 SMGYKDPTPIQ 336
+G+K+PTPIQ
Sbjct: 158 ELGFKEPTPIQ 168
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 193 EDYRNKHEVTVSGVEVPNPIEHFEEANFPD 282
E Y KHE+TVSG +VP P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 34.3 bits (75), Expect = 0.021
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Frame = +1
Query: 91 NMRRPNWD--SLSLQPFNKDFYNPHKSVLDRSPYEVE-DYRNKHEVTVSGVEVPNPIEHF 261
N R WD + PF D P + ++ + D + SG VP P+ F
Sbjct: 102 NNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTF 161
Query: 262 EEANFPDYVCQAIKSMGYKDPTPIQ 336
E + + + I+ Y PTP+Q
Sbjct: 162 AEIDLGEALNLNIRRCKYVKPTPVQ 186
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 31.5 bits (68), Expect = 0.15
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 172 DRSPYEVEDYRNKHEV-TVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQA 339
+ + Y+ ED K TV GV + F E N + +A +++GYK PTPIQA
Sbjct: 141 EAAEYKPEDATPKPFFSTVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQA 195
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 31.5 bits (68), Expect = 0.15
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = +1
Query: 91 NMRRPNWDSLSLQ--PFNKDFY-NPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHF 261
N R WD + PF D +P + + + E Y + + SG VP P+ F
Sbjct: 90 NARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTF 148
Query: 262 EEANFPDYVCQAIKSMGYKDPTPIQ 336
E + + + I+ Y PTP+Q
Sbjct: 149 AEIDLGEALNLNIQRCKYVKPTPVQ 173
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 31.5 bits (68), Expect = 0.15
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = +1
Query: 259 FEEANFPDYVCQAIKSMGYKDPTPIQ 336
FE N V AIK GYK PTPIQ
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQ 55
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 31.1 bits (67), Expect = 0.20
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +1
Query: 91 NMRRPNWDSLSLQPF--NKDFYNPHKSVLDRSPYEVEDYR--NKHEVTVSGVEVPNPIEH 258
+MRRPN D+ +L+PF N+ F NP +S + +E+ R + E T G +V +
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 259 FEE 267
EE
Sbjct: 811 NEE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 31.1 bits (67), Expect = 0.20
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +1
Query: 91 NMRRPNWDSLSLQPF--NKDFYNPHKSVLDRSPYEVEDYR--NKHEVTVSGVEVPNPIEH 258
+MRRPN D+ +L+PF N+ F NP +S + +E+ R + E T G +V +
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 259 FEE 267
EE
Sbjct: 811 NEE 813
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 31.1 bits (67), Expect = 0.20
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = +1
Query: 91 NMRRPNWD--SLSLQPFNKDF-YNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHF 261
N R WD + PF D P + + + + Y + V SG +VP P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 262 EEANFPDYVCQAIKSMGYKDPTPIQ 336
+ + D + I+ Y PTP+Q
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQ 178
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 31.1 bits (67), Expect = 0.20
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = +1
Query: 91 NMRRPNWD--SLSLQPFNKDF-YNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHF 261
N R WD + PF D P + + + + Y + V SG +VP P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 262 EEANFPDYVCQAIKSMGYKDPTPIQ 336
+ + D + I+ Y PTP+Q
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQ 178
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 31.1 bits (67), Expect = 0.20
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 178 SPYEVEDYRNKHEVTVSGV--EVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
S ++ + R K ++ V G VP P+ F P + +++ GY PTPIQ
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQ 137
>At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xylan
endohydrolase isoenzyme X-I, Hordeum
vulgare,PID:g1813595
Length = 544
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +1
Query: 112 DSLSLQPFNKDFYNPH-KSVLDRS---PYEVEDYRNKHE 216
DS+SLQPF +D +N H + +D S P + NK E
Sbjct: 140 DSVSLQPFTQDEWNAHQEQSIDNSRKGPVRIRVVNNKGE 178
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 247 PIEHFEEANFPDYVCQAIKSMGYKDPTPIQ 336
PI+ F++ D V + + GYK P+ IQ
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQ 49
>At4g31540.1 68417.m04478 exocyst subunit EXO70 family protein
(EXO70-G1) tomato leucine zipper-containing protein -
Lycopersicon esculentum, PIR2:S21495; contains Pfam
domain PF03081: Exo70 exocyst complex subunit;
Length = 687
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 65 PREISLVGKICDALIGIRCRSNHLTKIFIILINQSW 172
PR +S V C+ LIG + +S LT+ ++LI++SW
Sbjct: 430 PRLVSFVTDYCNKLIGDKYKST-LTQ--VLLIHKSW 462
>At2g26160.1 68415.m03139 F-box family protein contains F-box domain
Pfam:PF00646
Length = 359
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 124 LQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTV 225
L PF + P + LD +EV + R +E+ +
Sbjct: 97 LSPFFRQLLTPSQQTLDLLKFEVSEIRQSYEIHI 130
>At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 685
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 53 VALAPREISLVGKICDALIGIRCRSNHLTKIFIILIN 163
+ P S V +I LI + C NHL +I + LIN
Sbjct: 3 IVTVPSATSKVQQI-KTLISVACTVNHLKQIHVSLIN 38
>At2g39710.1 68415.m04872 aspartyl protease family protein contains
profile Pfam PF00026: Eukaryotic aspartyl protease;
contains Prosite PS00141: Eukaryotic and viral aspartyl
proteases active site.;
Length = 442
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 193 LLHMVTYPRLIYEDYKNLC*MVGATANPN 107
+L +V P +++ +LC VG+T PN
Sbjct: 320 VLRLVDDPDFVFQGTMDLCYKVGSTTRPN 348
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 148 YNPHKSVLDRSPYEVEDYRNKHE-VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDP 324
Y+ + S +D+ + R E +SGV + +FE F IK+M +P
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 325 TPIQ 336
+P++
Sbjct: 232 SPVR 235
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 148 YNPHKSVLDRSPYEVEDYRNKHE-VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDP 324
Y+ + S +D+ + R E +SGV + +FE F IK+M +P
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 325 TPIQ 336
+P++
Sbjct: 255 SPVR 258
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 148 YNPHKSVLDRSPYEVEDYRNKHE-VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDP 324
Y+ + S +D+ + R E +SGV + +FE F IK+M +P
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 325 TPIQ 336
+P++
Sbjct: 232 SPVR 235
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +1
Query: 235 EVPNPI---EHFEEANFPDYVCQAIKSMGYKDPTPIQA 339
E+ +P+ + FEE PD + +++ G+ PT +Q+
Sbjct: 101 EIVSPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQS 138
>At5g50220.1 68418.m06220 F-box family protein contains F-box domain
Pfam:PF00646
Length = 357
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 118 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEH 258
LS Q +Y P ++ + R E YR KH V + VP+ +E+
Sbjct: 309 LSCQTLYVYYYGPKRNSMRRVEVEGTKYRRKHLVHI--CPVPDHVEN 353
>At4g36100.1 68417.m05138 expressed protein contains Pfam domain,
PF04859: Plant protein of unknown function (DUF641)
Length = 236
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 178 SPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVC 291
+PY+ E + +V +S ++ + ++HF N P VC
Sbjct: 38 TPYDPEKIQAADKVVISELKNLSEMKHFYRENNPKPVC 75
>At4g34080.1 68417.m04835 expressed protein contains Pfam profile
PF04859: Plant protein of unknown function (DUF641
Length = 331
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 178 SPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVC 291
+PY+ E + +V +S ++ + ++HF N P VC
Sbjct: 38 TPYDPEKIQAADKVVISELKNLSEMKHFYRENNPKPVC 75
>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 942
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 143 SLLNGWSDSESQLGRRIF 90
+LL GW+ S +LGRR F
Sbjct: 35 TLLTGWNRSSYELGRRSF 52
>At2g45260.1 68415.m05634 expressed protein contains Pfam profile
PF04859: Plant protein of unknown function (DUF641
Length = 425
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 178 SPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVC 291
+PY+ E + +V +S ++ + ++HF N P VC
Sbjct: 62 TPYDPEKIQAADKVVISELKNLSEMKHFYRENNPKPVC 99
>At1g77360.1 68414.m09009 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 481
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +2
Query: 92 ICDALIGIRCRSNHLTKIFIILINQSWIGHHMK*RTIETNTKSLLVELKYLI 247
+ ++LIG C++N + ++ +L MK + + N+KS + L++LI
Sbjct: 308 VFNSLIGAFCKANRMKNVYRVL-------KEMKSKGVTPNSKSCNIILRHLI 352
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.134 0.423
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,541,918
Number of Sequences: 28952
Number of extensions: 119768
Number of successful extensions: 339
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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