Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C14
         (181 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72680.1 68414.m08405 cinnamyl-alcohol dehydrogenase, putativ...    29   0.43 
At1g29170.1 68414.m03569 expressed protein ; expression supporte...    28   0.76 
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    25   5.3  
At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar...    25   5.3  
At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar...    25   5.3  

>At1g72680.1 68414.m08405 cinnamyl-alcohol dehydrogenase, putative
           similar to cinnamyl-alcohol dehydrogenase GB:AAC35846
           [Medicago sativa], SP|Q08350 [Picea abies]
          Length = 355

 Score = 29.1 bits (62), Expect = 0.43
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 158 HCQICYLHQIWNRRFHG 108
           HC +CY   IW+R  HG
Sbjct: 44  HCGVCYADVIWSRNQHG 60


>At1g29170.1 68414.m03569 expressed protein ; expression supported
           by MPSS
          Length = 1016

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 127 GTAVSTAIIP---TTRHFLF*VRTDDVNSNFRFMSKQGPPARG 8
           G  VS+++ P   T    L    T+D + NF+F   QG  ARG
Sbjct: 272 GVFVSSSLTPGSCTIASVLSECETEDAHDNFQFSPSQGQAARG 314


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 78  NRKCLVVGIIAVETAVPNLVEVTNLAMEAVG 170
           +++CL+V I  V   +  ++EVTNL     G
Sbjct: 511 SKRCLLVEIHRVYDFITEILEVTNLTYPCTG 541


>At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
           esculentum]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 389

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 179 IYHPHCLHCQICYLHQI-WNRRF-HGYYSNHQTFSI 78
           ++HPHC  C+ C   +  W  RF   + SN + + +
Sbjct: 102 VFHPHCEECRDCKSSKSNWCARFADDFLSNTRRYGM 137


>At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
           esculentum]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 389

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 179 IYHPHCLHCQICYLHQI-WNRRF-HGYYSNHQTFSI 78
           ++HPHC  C+ C   +  W  RF   + SN + + +
Sbjct: 102 VFHPHCEECRDCKSSKSNWCARFADDFLSNTRRYGM 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,115,246
Number of Sequences: 28952
Number of extensions: 37398
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 12,070,560
effective HSP length: 39
effective length of database: 10,941,432
effective search space used: 218828640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)