Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C13
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    29   0.21 
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   1.1  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    26   2.6  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    25   6.0  

>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 29.5 bits (63), Expect = 0.21
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +2

Query: 167 NQQTIEDRMDVDEKLNRKRDLKDDSEATQPKKPCLDKEIRNEDD 298
           ++Q IE+ ++ D+  N + D+ DD E+ Q  +  L++E   E+D
Sbjct: 49  DEQEIEEALEEDDT-NYEEDIIDDEESAQVDEEELEEEEEEEED 91


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +2

Query: 167 NQQTIEDRMDVDEKLNRKRDLKDDSEATQPKKPC----LDKEIRNEDD 298
           N Q IE      E   RKR +++ ++  Q KKP     L  E  NEDD
Sbjct: 179 NNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELSDEETNEDD 226


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 179 IEDRMDVDEKLNRKRDLKDD 238
           +ED  D+DE  N  +D  DD
Sbjct: 568 LEDNSDIDESANAGKDFSDD 587


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 227 LKDDSEATQPKKP 265
           LKD SEAT PK+P
Sbjct: 748 LKDQSEATVPKQP 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,105,375
Number of Sequences: 5004
Number of extensions: 16957
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)