Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C13
         (408 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0739 - 19833462-19834456,19835272-19835333,19835846-198359...    29   1.9  
02_05_0121 + 26015578-26015613,26015734-26016066,26016184-26016978     28   3.3  
05_01_0233 + 1735681-1735683,1735931-1736164                           27   4.3  
11_02_0084 + 8142489-8142540,8142703-8142812,8143026-8143251,815...    27   5.7  

>09_04_0739 -
           19833462-19834456,19835272-19835333,19835846-19835937,
           19836271-19836540,19836795-19836913,19836947-19837778
          Length = 789

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 206 KLNRKRDLKDDSEATQPKKPCLDKEIRNEDDHKLEN 313
           KL +K + +        +KP +D++++++DD KL+N
Sbjct: 304 KLEKKPENRGTMATIPRRKPPVDEKVQHKDDSKLQN 339


>02_05_0121 + 26015578-26015613,26015734-26016066,26016184-26016978
          Length = 387

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 161 LGNQQTIEDRMDVDEKLNRKRDLKDDSEATQPKKPCLDKEIRNEDDH 301
           +G+  ++ED +D++E     RD  +  EA       ++KE R+ D H
Sbjct: 58  MGDGFSVEDLLDLEELCEVDRDGGEQGEAAAAAAAAVEKE-RSSDSH 103


>05_01_0233 + 1735681-1735683,1735931-1736164
          Length = 78

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 191 MDVDEKLNRKRDLKDDSEATQPKK--PCLDKEIRNED 295
           MDV EK  R   L DD + T PK+  P  D +  N+D
Sbjct: 1   MDVMEKSRRAHFLFDDDDQTPPKQNGPQNDDQHNNDD 37


>11_02_0084 +
           8142489-8142540,8142703-8142812,8143026-8143251,
           8156316-8156488,8156649-8157158
          Length = 356

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 179 IED-RMDVDEKLNRKRDLKDDSEATQPKKPCLDKEIRNEDD 298
           IED ++D DE+ +      D +EA+   KP   K   NEDD
Sbjct: 229 IEDVQVDNDEENDGPATTDDRAEASSASKPKKSKTQENEDD 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,513,897
Number of Sequences: 37544
Number of extensions: 94595
Number of successful extensions: 268
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)