Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C13
         (408 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)                     32   0.21 
SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.21 
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)                       28   2.6  
SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51)           28   2.6  
SB_41461| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)                  27   4.5  
SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042)                  27   5.9  
SB_48225| Best HMM Match : DUF234 (HMM E-Value=5.3)                    27   7.8  
SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_30070| Best HMM Match : zf-C2H2 (HMM E-Value=4.79945e-42)           27   7.8  

>SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)
          Length = 1199

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 173 QTIEDRMDVDEKLNRKRDLKDDSEATQPKKPCLDKEIRNEDD 298
           + ++   + DEK  +KR  K + E T  K P  D+E R +++
Sbjct: 101 EEVDTESERDEKEKKKRSKKKEKEGTSLKNPLTDQEARTQNN 142


>SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 173  QTIEDRMDVDEKLNRKRDLKDDSEATQPKKPCLDKEIRNEDD 298
            + ++   + DEK  +KR  K + E T  K P  D+E R +++
Sbjct: 1148 EEVDTESERDEKEKKKRSKKKEKEGTSLKNPLTDQEARTQNN 1189


>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +2

Query: 167 NQQTIEDRMDVDEKLNRKRDLKDD-----SEATQPKKPCLDKEIRNEDDHKL 307
           +++  EDR D   K  RK D  +D     S+ +  KK C  KE R    HKL
Sbjct: 107 DERKCEDRKDKTRKKKRKHDSSEDSDDNSSDVSAKKKQC--KEERKRKRHKL 156


>SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)
          Length = 1167

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
 Frame = +2

Query: 5   ELNLSEAKTPSKRTRREESIVDDETPAMEDMI-----VQDDAGXXXXXXXXXXXXXXLGN 169
           EL   E +  +K +  E +IVD E    ED +     VQD+                +  
Sbjct: 214 ELEEVEVQKDAKASEEETAIVDVEG-VEEDKVEGVAKVQDEVEEQKEVKASEEETAVVDV 272

Query: 170 QQTIEDRMDVDEKLNRKRDLKDDSEATQPKKPCLDKEIRNED 295
           +   ED+++  EK+  +   K++ +AT+ +   +D E  +ED
Sbjct: 273 EGVEEDKVEGVEKVQDEVKQKEEVKATEKEMAVVDVEGASED 314


>SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51)
          Length = 976

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +2

Query: 182 EDRMDVDEKLNRKRDLKDDSEATQPKKPCLDKEIRNEDDHKLENNTD 322
           E++ D D+  ++ +D +DDS  ++ ++  +D+ I  E +  LEN  D
Sbjct: 462 EEKKDKDK--DKDKDEEDDSSDSEEEREAMDEMIMEEIEAALENAGD 506


>SB_41461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +2

Query: 161 LGNQQTIEDRMDVDEKLNRKRDLKDDSEATQPKKPCLDKEIRNEDDHKLE 310
           L N+Q  +++M  +E+++  R+L  D +   PK PC  K   N D+  +E
Sbjct: 336 LRNRQ--KEQMKTNEEIDL-RELPCDFDRLNPKNPCSVKACVNFDEENME 382


>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
          Length = 1089

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 176 TIEDRMDVDEKLNRKRDLKDDSEATQPKKPCLDKEIRNEDDHKLENN 316
           T ED +  ++ +  + D+  D + T       D +I +EDD   E+N
Sbjct: 97  TSEDDITSEDNITSEDDITSDDDITSDDDITSDDDITSEDDITSEDN 143


>SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042)
          Length = 440

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 209 LNRKRDLKDDSEATQPKKPCLDKEIRNEDDHKL 307
           L+RKR   +  E T PKK CL++    E   +L
Sbjct: 27  LDRKRASSESKEETVPKKVCLEESELKEATKEL 59


>SB_48225| Best HMM Match : DUF234 (HMM E-Value=5.3)
          Length = 242

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 179 IEDRMDVDEKLNRKRDLKDDSEATQPKKPCLDKEIRNEDDHKL 307
           + DR+DV++     R + D     Q +K   DK+I + D+ K+
Sbjct: 122 LTDRVDVNDDNGNPRPVDDFQPRAQLRKLFQDKDILSSDEVKI 164


>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 182  EDRMDVDEKLNRKRDLKD-DSEATQPKKPCLDKEIRNEDDHKLENN 316
            EDR+  +++L RKR+  D        ++  L++E R ED+ + E +
Sbjct: 1169 EDRLRREDELRRKREDDDRGRRKLAEERRLLEEERRREDERRREED 1214


>SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 20/96 (20%), Positives = 38/96 (39%)
 Frame = +2

Query: 8   LNLSEAKTPSKRTRREESIVDDETPAMEDMIVQDDAGXXXXXXXXXXXXXXLGNQQTIED 187
           L L +  T       ++++  D+T A++D +  DD                L +  T++D
Sbjct: 131 LTLDDTLTLDDTLTLDDTLTLDDTLALDDTLALDDT-LTLDDTLTLDDTLTLDDTLTLDD 189

Query: 188 RMDVDEKLNRKRDLKDDSEATQPKKPCLDKEIRNED 295
            + +D+ L     L  D+  T      LD  +  +D
Sbjct: 190 TLTLDDTLALDDTLTLDNTLTLDDTLTLDDTLTLDD 225


>SB_30070| Best HMM Match : zf-C2H2 (HMM E-Value=4.79945e-42)
          Length = 436

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +2

Query: 236 DSEATQPKKPCLDKEIRNEDDHKLENNTD 322
           D +++QP+KP   K++ +E +   E++T+
Sbjct: 227 DKKSSQPQKPVEKKKVESESESDSESDTE 255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,880,860
Number of Sequences: 59808
Number of extensions: 129602
Number of successful extensions: 409
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)