Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C13
(408 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g70100.3 68414.m08067 expressed protein 30 0.52
At1g70100.2 68414.m08066 expressed protein 30 0.52
At1g70100.1 68414.m08065 expressed protein 30 0.52
At3g29385.1 68416.m03692 hypothetical protein 29 1.2
At3g29075.1 68416.m03637 glycine-rich protein 28 2.8
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ... 28 2.8
At3g04420.1 68416.m00468 no apical meristem (NAM) family protein... 27 3.7
At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3, ubiqu... 27 3.7
At1g56660.1 68414.m06516 expressed protein 27 3.7
At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger) fa... 27 4.8
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 27 6.4
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin... 26 8.5
At5g45510.1 68418.m05590 leucine-rich repeat family protein cont... 26 8.5
At3g31930.1 68416.m04041 hypothetical protein 26 8.5
At1g77270.1 68414.m08999 expressed protein 26 8.5
At1g69200.1 68414.m07921 pfkB-type carbohydrate kinase family pr... 26 8.5
At1g17360.1 68414.m02116 COP1-interacting protein-related simila... 26 8.5
>At1g70100.3 68414.m08067 expressed protein
Length = 504
Score = 30.3 bits (65), Expect = 0.52
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 179 IEDRMDVDEKLNRKRDLKDD--SEATQPKKPCLDKEIRNEDDHKLENNTD 322
+ED+ V+E + K ++K+D S+ T L KE + E DH TD
Sbjct: 191 VEDKEKVEEVICMKEEVKEDVPSKDTGEMSETLMKETKKEKDHNPIKKTD 240
>At1g70100.2 68414.m08066 expressed protein
Length = 482
Score = 30.3 bits (65), Expect = 0.52
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 179 IEDRMDVDEKLNRKRDLKDD--SEATQPKKPCLDKEIRNEDDHKLENNTD 322
+ED+ V+E + K ++K+D S+ T L KE + E DH TD
Sbjct: 191 VEDKEKVEEVICMKEEVKEDVPSKDTGEMSETLMKETKKEKDHNPIKKTD 240
>At1g70100.1 68414.m08065 expressed protein
Length = 467
Score = 30.3 bits (65), Expect = 0.52
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 179 IEDRMDVDEKLNRKRDLKDD--SEATQPKKPCLDKEIRNEDDHKLENNTD 322
+ED+ V+E + K ++K+D S+ T L KE + E DH TD
Sbjct: 191 VEDKEKVEEVICMKEEVKEDVPSKDTGEMSETLMKETKKEKDHNPIKKTD 240
>At3g29385.1 68416.m03692 hypothetical protein
Length = 218
Score = 29.1 bits (62), Expect = 1.2
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 ELNLSEAKTPSKRTRREESIVDDET--PAMEDMIVQDDAGXXXXXXXXXXXXXXLGNQQT 178
+++ +EA +PSKR + + + PA + + D+A L N +
Sbjct: 50 KVDTNEAISPSKRRLLSSTHLMQQLLQPAPTFVFLGDNAALNYEIVLYYVSRINLANSCS 109
Query: 179 IEDRMDVDEKLNRKRDLKDDSEATQPKKPCLDKEIRNEDDHKLENN 316
++ R D+D+ +NR+ + + Q ++ L NE KLE+N
Sbjct: 110 LKCRSDLDKSINRQ---TSKTASNQDQQHSLLVNAFNEKIQKLESN 152
>At3g29075.1 68416.m03637 glycine-rich protein
Length = 294
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 185 DRMDVDEKLNRKRDLKDDSEATQPKKPCLDKEIRNEDDHKLENNTD 322
D D DEK +K+D DD E + KK D + + H ++ D
Sbjct: 198 DDDDYDEKKKKKKDYNDDDE-KKKKKHYNDDDDEKKKKHNYNDDDD 242
>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
subunit HAP3-related contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to polymerase epsilon p17
subunit (DNA polymerase epsilon subunit 3) (YB-like
protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7) [Mus
musculus];
Length = 275
Score = 27.9 bits (59), Expect = 2.8
Identities = 21/100 (21%), Positives = 39/100 (39%)
Frame = +2
Query: 20 EAKTPSKRTRREESIVDDETPAMEDMIVQDDAGXXXXXXXXXXXXXXLGNQQTIEDRMDV 199
++K + R +E +D T +D+ G GN + +D +
Sbjct: 150 KSKIDEETKRNDEETENDNTEEENGNDEEDENGNDEEDENDDENTEENGNDEENDDE-NT 208
Query: 200 DEKLNRKRDLKDDSEATQPKKPCLDKEIRNEDDHKLENNT 319
+E N + + K+D E + + +E NED EN +
Sbjct: 209 EENGNDEENEKEDEENSMEENGNESEESGNEDHSMEENGS 248
>At3g04420.1 68416.m00468 no apical meristem (NAM) family protein
similar to NAC1 (GI:7716952) {Medicago truncatula};
contains Pfam PF02365 : No apical meristem (NAM) protein
Length = 342
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +2
Query: 197 VDEKLNRKRDLKDDSEATQPKKP----CLDKEIRNEDDHKLENNT 319
VDE++N ++KDD +P+KP +D ++DD L + T
Sbjct: 206 VDEQVNHIMNMKDDRNNHRPQKPLTGVLIDDSSDDDDDSDLLSPT 250
>At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3,
ubiquitin ligase; contains similarity to
anaphase-promoting complex subunit 2 GI:6180009 from
[Homo sapiens]
Length = 865
Score = 27.5 bits (58), Expect = 3.7
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 164 GNQQTIEDRMDVDEKLNRKRDLKD-DSEATQPKKPCLDKEIRN 289
G ++ +D MD+DEKL K D D +Q K+ DK ++N
Sbjct: 200 GIEEQEDDCMDLDEKLRYKNGEMDVDEGCSQGKRLGHDKLVKN 242
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +2
Query: 167 NQQTIEDRMDVDEKLNRKRDLKDDSEATQPKKPCLDKEIRNEDD 298
+ +T ++ + D K N+K++ KD+S A + KK DKE + +D+
Sbjct: 235 HDETDQEMKEKDSKKNKKKE-KDESCAEEKKKK-PDKEKKEKDE 276
>At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger C3HC4 type (RING finger), PF02182: YDG/SRA
domain
Length = 465
Score = 27.1 bits (57), Expect = 4.8
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 164 GNQQTIEDRMDVDEKLNRKRDLKDDSEATQPKKPCLDKEIRNEDD 298
G + E D DE RKR L D EA + K D EI + +D
Sbjct: 53 GGSKADESMTDADETKKRKRILSGDCEADENNKS--DGEIASLND 95
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 179 IEDRMDVDEKLNRKRDLKDD-SEATQPKKPCLDKEIRNEDDHKLENN 316
+E +E++ +K+ K EA + K+P +++E +ED ENN
Sbjct: 6 MEQHSSENEEIKKKKHKKRARDEAKKLKQPAMEEEPDHEDGDAKENN 52
>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 283
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 185 DRMDVDEKLNRKRDLKDDSEATQPKKPCLDKEIRNEDD 298
D + + EKL K K D + QPKK +KE +N++D
Sbjct: 72 DPVKLREKLEEKTKKKVDLVSPQPKKE-KEKENKNKND 108
>At5g45510.1 68418.m05590 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 1222
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 179 IEDRMDVDEKL--NRKRDLKDDSEATQPKKPCLDKEIRNEDDHKLENNTDA 325
+E + V +KL ++K+ K+ +E + +K +D + DH +N TDA
Sbjct: 150 LEKKEAVVKKLEDDKKKKEKEAAEKLEAEKKLVDPAAKKAKDHGNKNPTDA 200
>At3g31930.1 68416.m04041 hypothetical protein
Length = 164
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +2
Query: 179 IEDRMDVDEKLNRKRDLKDDSEATQPKKPCLD----KEIRNEDDHKLENNTD 322
IED D++ NR + D + KK CL +++ ++D ++ N D
Sbjct: 95 IEDADDLERASNRSHLILDTKRCSNSKKICLKPIKLEKLNGKNDEEIGNKED 146
>At1g77270.1 68414.m08999 expressed protein
Length = 682
Score = 26.2 bits (55), Expect = 8.5
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Frame = +2
Query: 179 IEDRMDVDEKLNRKRDL-------KDDSEATQ-PKKPCLDKEIRNEDDHKLENNTD 322
I+ ++DE + DL KDD+ A + PKK + K I N++ ++E++TD
Sbjct: 53 IKTESNIDEVCGKMMDLCVERNASKDDALAKKNPKKSAVAKTILNKEIIEIESDTD 108
>At1g69200.1 68414.m07921 pfkB-type carbohydrate kinase family
protein contains Pfam profile: PF00294 pfkB family
carbohydrate kinase
Length = 614
Score = 26.2 bits (55), Expect = 8.5
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
Frame = +2
Query: 38 KRTRREESIVDDET--PAMEDMIVQDDAGXXXXXXXXXXXXXXLGNQQTIEDRMDVDE-- 205
KRT +++ +V DE E ++ DD ++ DV+E
Sbjct: 78 KRTTKKKVVVKDEPLEEISEFLVDNDDVLDKESIVSALKPKKTRTRKKAAAASSDVEEVK 137
Query: 206 ---KLNRKRDLKDDSEATQPKKPCLDKEIRNEDDHKLENNTD 322
K+ RKR +K D + +D E+ + ++ +TD
Sbjct: 138 TEKKVRRKRTVKKDKDVEDDLATIMDAEVSDVEEALAVESTD 179
>At1g17360.1 68414.m02116 COP1-interacting protein-related similar
to COP1-Interacting Protein 7 (CIP7) (GI:3327870)
[Arabidopsis thaliana]
Length = 1032
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 167 NQQTIEDRMDVDEKLNRKRDLKDDSEATQPKKPCLDKEIRNEDD 298
NQ+ D DV E L + +SEA + +K L+ ++ E++
Sbjct: 787 NQKQNTDIDDVSENLKNEAFDDTESEAEEEEKEVLENPVKGEEE 830
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,565,841
Number of Sequences: 28952
Number of extensions: 83924
Number of successful extensions: 305
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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