Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C11
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   206   2e-54
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   201   4e-53
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    38   8e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    29   0.50 
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    26   2.7  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    25   8.1  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  206 bits (502), Expect = 2e-54
 Identities = 97/154 (62%), Positives = 113/154 (73%)
 Frame = +3

Query: 27  DTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRA 206
           D+H+G++N+  +ME YV+KRR DG H+INL +TWEK           E+PADV VISSR 
Sbjct: 25  DSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRP 84

Query: 207 FGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVN 386
           +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV DP  D Q I EAS+VN
Sbjct: 85  YGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVN 144

Query: 387 IPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 488
           IPVIALC+TDS L  VD+AIP N K   SIGL W
Sbjct: 145 IPVIALCDTDSILNHVDVAIPINNKGYKSIGLAW 178


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  201 bits (491), Expect = 4e-53
 Identities = 92/152 (60%), Positives = 112/152 (73%)
 Frame = +3

Query: 33  HLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRAFG 212
           H+G++N+  +M+ YV+KRR DG H++NL +TWEK           E+PADV V+S+R +G
Sbjct: 26  HIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYG 85

Query: 213 QRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIP 392
            RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V DP  D Q I EAS+VNIP
Sbjct: 86  HRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIP 145

Query: 393 VIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 488
           VIALC+TDS L  VDIAIP N K   SIGL+W
Sbjct: 146 VIALCDTDSILNHVDIAIPTNNKGRKSIGLIW 177


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 37.9 bits (84), Expect = 8e-04
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 318 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKS 464
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDS 228


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
 Frame = +3

Query: 240 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 404
           +  A P  G       T+ I A F+  +P + ++     D   +   T A    +  + L
Sbjct: 29  YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87

Query: 405 CNTDSPLRFVDIAIPCNTKSSHSI 476
           C+ +S  RF D+A+  NTK +H I
Sbjct: 88  CDRNSK-RFADLAVAANTKFTHFI 110


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 371 FSNWLMILSRVQNNQQPWFA 312
           F N L+++ + Q+N++PW A
Sbjct: 498 FQNALLLVKKTQSNEKPWAA 517


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 306 AFREPRLLIVLDPAQDHQPITEASY 380
           A R+ RLL+++ P   H P+    Y
Sbjct: 62  AGRDDRLLLIVGPCSLHDPVAAKEY 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,633
Number of Sequences: 5004
Number of extensions: 35961
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)