Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C11
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   199   8e-52
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   198   1e-51
07_03_0771 - 21381276-21381461,21381583-21381733,21381823-213820...    28   3.5  
04_04_0157 + 23165638-23166633                                         28   3.5  
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386...    27   6.1  
04_04_0907 + 29304830-29305030,29305296-29305547                       27   8.1  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  199 bits (486), Expect = 8e-52
 Identities = 92/155 (59%), Positives = 111/155 (71%), Gaps = 1/155 (0%)
 Frame = +3

Query: 27  DTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRA 206
           D HLG +N +FQME YVYKRR DG ++INL +TWEK           E+P D+ V S+R 
Sbjct: 26  DVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARP 85

Query: 207 FGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVN 386
           +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  N
Sbjct: 86  YGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGN 145

Query: 387 IPVIALCNTDSPLRFVDIAIPCNTKSSHSIG-LMW 488
           IP IA C+TDSP+R+VDI IP N K  +SIG L W
Sbjct: 146 IPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  198 bits (484), Expect = 1e-51
 Identities = 92/155 (59%), Positives = 110/155 (70%), Gaps = 1/155 (0%)
 Frame = +3

Query: 27  DTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRA 206
           D HLG +N +FQME YVYKRR DG ++INL +TWEK           E+P D+ V S+R 
Sbjct: 26  DVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARP 85

Query: 207 FGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVN 386
           +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  N
Sbjct: 86  YGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGN 145

Query: 387 IPVIALCNTDSPLRFVDIAIPCNTKSSHSIG-LMW 488
           IP IA C+TDSP+R+VDI IP N K   SIG L W
Sbjct: 146 IPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFW 180


>07_03_0771 -
           21381276-21381461,21381583-21381733,21381823-21382060,
           21382161-21382368,21382650-21382777,21382892-21383029,
           21383160-21384012
          Length = 633

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -2

Query: 398 YYWNVDI*SFSNWLMILSRVQNNQQPWFAECGLDLVSKCTRSETSSN 258
           Y    D+ SF   ++ +   Q N  P+FAE   DLVS   R  T  N
Sbjct: 535 YSTKSDVFSFGILILEIVTGQRNSGPYFAEQNEDLVSLVWRHWTEGN 581


>04_04_0157 + 23165638-23166633
          Length = 331

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 133 FSHVRRRLITCVPSPRRL 80
           FSH+RRRL+  +P+P  L
Sbjct: 5   FSHLRRRLLAAIPNPNLL 22


>03_02_0792 +
           11236785-11237337,11237711-11238261,11238446-11238628,
           11238768-11238966,11239055-11239761
          Length = 730

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 240 HTGATPIAGRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 413
           HT +T    R TP AF +   AA  E R+ +  +   ++      EA Y +I V  + + 
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329

Query: 414 DSPLR 428
           + P++
Sbjct: 330 EQPMQ 334


>04_04_0907 + 29304830-29305030,29305296-29305547
          Length = 150

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 342 PAQDHQPITE-ASYVNIPVIALCNTDSPLRFVDIAIPCNT 458
           P  D   + E A+  NIP+I L + D P    +IA  C T
Sbjct: 23  PESDRPRLAEVATDSNIPLIDLASPDKPRVIAEIAQACRT 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,316,636
Number of Sequences: 37544
Number of extensions: 256388
Number of successful extensions: 629
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)