Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C11
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               241   2e-64
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   0.67 
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   28   3.6  
SB_15683| Best HMM Match : Y_phosphatase (HMM E-Value=0)               28   4.7  
SB_37520| Best HMM Match : Calx-beta (HMM E-Value=0.023)               27   8.3  
SB_19271| Best HMM Match : Calx-beta (HMM E-Value=0.023)               27   8.3  
SB_56996| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_50735| Best HMM Match : Calx-beta (HMM E-Value=0.023)               27   8.3  
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  241 bits (591), Expect = 2e-64
 Identities = 109/152 (71%), Positives = 125/152 (82%)
 Frame = +3

Query: 33  HLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRAFG 212
           HLGA N +FQME YVYKR+ DG ++IN+++TWEK           E+PADV VIS+R +G
Sbjct: 24  HLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLLAARIIVTIENPADVCVISARPYG 83

Query: 213 QRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIP 392
           QRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP  DHQP+TEASYVNIP
Sbjct: 84  QRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRIDHQPVTEASYVNIP 143

Query: 393 VIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 488
           VIA CNTDSPLR VD+AIPCN K  HSIGLM+
Sbjct: 144 VIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMF 175


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 336 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 431
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 312 REPR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 461
           RE R +++ +D A  H P  + +Y NI +I L  NT S  + +D  I  N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306


>SB_15683| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 753

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -2

Query: 173 ILHGDNSTSSEYKLFPCTPKINYVRTVTTAF---INVRLHLEINIFRSQMGVAAS 18
           +LHG N+T  +   F C  K N  RT  +A    +   LH  I   ++  G A S
Sbjct: 18  VLHGKNTTPIQTSNFCCAEKKNGTRTPRSALNKHLTKYLHTFIRSVQAVSGTAVS 72


>SB_37520| Best HMM Match : Calx-beta (HMM E-Value=0.023)
          Length = 139

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 173 ILHGDNSTSSEYKLFPCTPKINYVRTVTTAFINVRLHLEINIF-RSQMGVAAS 18
           +LHG N+T  +   F C  K N  RT  +A +N  L   ++ F RS   V+ +
Sbjct: 18  VLHGKNTTPIQTSNFCCAEKKNGTRTPRSA-LNKHLPKYLHTFIRSVQAVSGT 69


>SB_19271| Best HMM Match : Calx-beta (HMM E-Value=0.023)
          Length = 141

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 173 ILHGDNSTSSEYKLFPCTPKINYVRTVTTAFINVRLHLEINIF-RSQMGVAAS 18
           +LHG N+T  +   F C  K N  RT  +A +N  L   ++ F RS   V+ +
Sbjct: 18  VLHGKNTTPIQTSNFCCAEKKNGTRTPRSA-LNKHLPKYLHTFIRSVQAVSGT 69


>SB_56996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 305 GLDLVSKCTRSETSSNWCCASVGSKFKHSTLAKCT 201
           G+  VS   RS++ +N C A+      HS+L K T
Sbjct: 10  GIYEVSNVNRSDSGNNSCVAASSIGLTHSSLVKVT 44


>SB_50735| Best HMM Match : Calx-beta (HMM E-Value=0.023)
          Length = 141

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 173 ILHGDNSTSSEYKLFPCTPKINYVRTVTTAFINVRLHLEINIF-RSQMGVAAS 18
           +LHG N+T  +   F C  K N  RT  +A +N  L   ++ F RS   V+ +
Sbjct: 18  VLHGKNTTPIQTSNFCCAEKKNGTRTPRSA-LNKHLPKYLHTFIRSVQAVSGT 69


>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1373

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 182 ISWILHGDNSTSSEYKLFPCTPKINY 105
           + W L  +N+  +EY L P T K+ Y
Sbjct: 569 LEWFLKNENALPAEYVLQPVTAKLPY 594


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,080,379
Number of Sequences: 59808
Number of extensions: 296359
Number of successful extensions: 562
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)