Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C11
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   201   2e-52
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   197   4e-51
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   197   4e-51
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.18 
At1g80540.1 68414.m09441 expressed protein ; expression supporte...    32   0.24 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   0.96 
At5g51370.1 68418.m06369 F-box family protein similar to unknown...    28   2.9  
At5g09560.1 68418.m01107 KH domain-containing protein various pr...    27   5.1  
At1g07150.1 68414.m00761 protein kinase family protein contains ...    27   9.0  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  201 bits (490), Expect = 2e-52
 Identities = 91/155 (58%), Positives = 110/155 (70%), Gaps = 1/155 (0%)
 Frame = +3

Query: 27  DTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRA 206
           + HLG +N N+QME YV+KRR DG ++ NL +TWEK           E+P D+ V S+R 
Sbjct: 26  EVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVAIENPQDIIVQSARP 85

Query: 207 FGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVN 386
           +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E +  N
Sbjct: 86  YGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGN 145

Query: 387 IPVIALCNTDSPLRFVDIAIPCNTKSSHSIG-LMW 488
           IP+IA C+TDSP+RFVDI IP N K  HSIG L W
Sbjct: 146 IPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFW 180


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  197 bits (480), Expect = 4e-51
 Identities = 90/155 (58%), Positives = 108/155 (69%), Gaps = 1/155 (0%)
 Frame = +3

Query: 27  DTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRA 206
           D HLG +N N+QME YV+KRR DG ++INL +TW+K           E+P D+ V S+R 
Sbjct: 27  DVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENPKDIIVQSARP 86

Query: 207 FGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVN 386
           +GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E +  N
Sbjct: 87  YGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGN 146

Query: 387 IPVIALCNTDSPLRFVDIAIPCNTKSSHSIG-LMW 488
           IP IA C+TDSP+ FVDI IP N K  HSIG L W
Sbjct: 147 IPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFW 181


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  197 bits (480), Expect = 4e-51
 Identities = 90/155 (58%), Positives = 108/155 (69%), Gaps = 1/155 (0%)
 Frame = +3

Query: 27  DTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRA 206
           D HLG +N N+QME YV+KRR DG ++INL +TW+K           E+P D+ V S+R 
Sbjct: 27  DVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENPKDIIVQSARP 86

Query: 207 FGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVN 386
           +GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E +  N
Sbjct: 87  YGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGN 146

Query: 387 IPVIALCNTDSPLRFVDIAIPCNTKSSHSIG-LMW 488
           IP IA C+TDSP+ FVDI IP N K  HSIG L W
Sbjct: 147 IPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFW 181


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 318 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 467
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At1g80540.1 68414.m09441 expressed protein ; expression supported
           by MPSS
          Length = 481

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 185 HISWILHGDNSTSSEYKLFPCTPKINYVRT 96
           H +  + G N T+S Y   PC P +NY+RT
Sbjct: 79  HFNIYVDGWNVTNSHYIAPPCNPSLNYLRT 108


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 273 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 374
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At5g51370.1 68418.m06369 F-box family protein similar to unknown
           protein (emb|CAB82288.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 355

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 472 ECEDLVLHGIAMSTNLRGESVLHKAITGMLTYEASVIG 359
           +C D +LHGIA   NL+G  ++  ++ G+ +   S IG
Sbjct: 183 KCNDNLLHGIAACKNLKGLRLV-GSVDGLYSSSVSDIG 219


>At5g09560.1 68418.m01107 KH domain-containing protein various
           predicted RNA binding proteins, Arabidopsis thaliana
          Length = 563

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 315 EPRLLIVLDPAQDHQPITEASYVNIPVI---ALCNTDSPLRFVDIAIPCNTKSS 467
           +PR+  +  P+ DH+ IT AS  N PV     L  +   +R VD+ I C+ +S+
Sbjct: 271 QPRIDYLPHPSYDHRLITSAS-KNPPVTIKQPLQASKDDIRQVDLKILCSNESA 323


>At1g07150.1 68414.m00761 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 499

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 314 AECGLDLVSKCTRSETSSNWCCASVGSKFKHSTLAKC 204
           +E G D + KC + + +  W C  +    +H  L++C
Sbjct: 249 SEIGRDFLEKCLKRDPNQRWSCDQL---LQHPFLSQC 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,370,939
Number of Sequences: 28952
Number of extensions: 196716
Number of successful extensions: 437
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)