Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C10
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.06c |atg12|apg12|autophagy associated protein Atg12|Sch...    53   2e-08
SPBC36.10 |||mitochondrial intermembrane space protein sorting p...    27   1.4  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    26   2.4  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   3.2  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   4.3  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    25   5.6  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    24   7.4  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    24   7.4  

>SPAC1783.06c |atg12|apg12|autophagy associated protein
           Atg12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 52.8 bits (121), Expect = 2e-08
 Identities = 22/39 (56%), Positives = 30/39 (76%)
 Frame = +1

Query: 10  LYVNQTFAPSPDQIVKNLYECFGTDGKLVLHYCKSQAWG 126
           LYVN +FAPSPD+IV NLY+ F  D  L+++YC + A+G
Sbjct: 94  LYVNSSFAPSPDEIVGNLYDNFAIDSHLLINYCINVAFG 132


>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 123 PRLAFAIMQHKLSISSEALVKILHNLIRRWS 31
           P L   + Q +  I + A +K L NLI +WS
Sbjct: 115 PELEATVFQQEARIEALACMKRLSNLIEQWS 145


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 309 SKSLELISLHYRYISFFKDIFKLH-DLI*VSISKLLKHLDYSSS 181
           SK L L +   R  S    IF L  DL+ V ++KLLK   YSSS
Sbjct: 86  SKGLVLATTGERMTSL---IFSLVIDLVGVHVNKLLKQASYSSS 126


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 185  EE*SKCFNNLLIET*IKSCNLKISLKKLMYR*CREIS 295
            +E S C  NLL     K+ + KI+L  ++ R C E S
Sbjct: 1151 QELSLCIENLLDSFLSKTNSYKIALNTVLVRICEEAS 1187


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -3

Query: 363 NFSTCRGLASKHSFIYIISKSLELI-SLH 280
           N ++   L  KH ++YI+ K+LELI S+H
Sbjct: 505 NDNSQAALLGKH-YVYIVKKNLELITSIH 532


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = -3

Query: 354 TCRGLASKHSFIYIISKSLELISLHYRYISFFKDIFKL 241
           TC GL+ K   ++++      ++L +RY S +  + ++
Sbjct: 28  TCSGLSLKSHLLFLLVYVTRYLNLFWRYKSLYYFLMRI 65


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 76  GTDGKLVLHYCKSQAW 123
           G+DG  +L  CKS AW
Sbjct: 262 GSDGSGILAMCKSGAW 277


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -3

Query: 393 GHNKSIMNSRNFSTCRGLASKHSFIYIISKSLELISLHY-RYISFFKDIFKLHDLI*VSI 217
           G + +    R + TC  L++     Y++S S EL+      Y   F  I  L  L+ VS+
Sbjct: 86  GIHYTYSRERLWGTCVILSTLFWSYYVLSNS-ELLEFEASEYSLLFILIIALDALLTVSL 144

Query: 216 SKLLKHLDYSSSN 178
             L  HL + ++N
Sbjct: 145 FGLFHHLMFLTTN 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,385,120
Number of Sequences: 5004
Number of extensions: 22497
Number of successful extensions: 54
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)