Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C10
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0726 + 5319809-5319839,5319918-5319976,5320859-5320927,532...    56   1e-08
11_04_0089 + 13383779-13384018,13384962-13385225                       27   4.1  

>06_01_0726 +
           5319809-5319839,5319918-5319976,5320859-5320927,
           5321009-5321071,5321360-5321419
          Length = 93

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 21/39 (53%), Positives = 30/39 (76%)
 Frame = +1

Query: 10  LYVNQTFAPSPDQIVKNLYECFGTDGKLVLHYCKSQAWG 126
           LYVN  F+P+PD+++ +LY  FG DG+LV++Y  S AWG
Sbjct: 55  LYVNSAFSPNPDELIIDLYNNFGIDGQLVVNYASSMAWG 93


>11_04_0089 + 13383779-13384018,13384962-13385225
          Length = 167

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 19  NQTFAPSPDQIVKNLYECFGTDGKLVLHYCKSQAW 123
           N  F PSP++  K    C G + + V ++  S  W
Sbjct: 95  NSPFIPSPEEYAKAAVRCIGYEPRCVPYWRHSIQW 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,181,110
Number of Sequences: 37544
Number of extensions: 123496
Number of successful extensions: 225
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)