Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C10
         (395 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC012266-1|AAH12266.2|  187|Homo sapiens ATG12 autophagy related...    80   2e-15
AB017507-1|BAA36493.1|  140|Homo sapiens Apg12 protein.                80   2e-15

>BC012266-1|AAH12266.2|  187|Homo sapiens ATG12 autophagy related 12
           homolog (S. cerevisiae) protein.
          Length = 187

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 33/39 (84%), Positives = 36/39 (92%)
 Frame = +1

Query: 10  LYVNQTFAPSPDQIVKNLYECFGTDGKLVLHYCKSQAWG 126
           +YVNQ+FAPSPDQ V  LYECFG+DGKLVLHYCKSQAWG
Sbjct: 149 IYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 187


>AB017507-1|BAA36493.1|  140|Homo sapiens Apg12 protein.
          Length = 140

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 33/39 (84%), Positives = 36/39 (92%)
 Frame = +1

Query: 10  LYVNQTFAPSPDQIVKNLYECFGTDGKLVLHYCKSQAWG 126
           +YVNQ+FAPSPDQ V  LYECFG+DGKLVLHYCKSQAWG
Sbjct: 102 IYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 140


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,325,408
Number of Sequences: 237096
Number of extensions: 707320
Number of successful extensions: 1232
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)