Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C10
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-7|AAK18856.1|  118|Caenorhabditis elegans Lc3, gabarap an...    33   0.074
AC006769-15|AAF60587.1|  337|Caenorhabditis elegans Serpentine r...    30   0.69 
AF016443-12|AAC24279.2|  340|Caenorhabditis elegans Seven tm rec...    28   2.8  

>U32305-7|AAK18856.1|  118|Caenorhabditis elegans Lc3, gabarap and
           gate-16 familyprotein 3 protein.
          Length = 118

 Score = 33.1 bits (72), Expect = 0.074
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = +1

Query: 10  LYVNQTFAPSPDQIVKNLYECFG---TDGKLV-LHYCKSQAWG 126
           LY++ TFAPSPD   + L  C+    TD +++ L Y  + A+G
Sbjct: 76  LYIDNTFAPSPDTTFETLSRCYSVKITDKEILELQYSITPAYG 118


>AC006769-15|AAF60587.1|  337|Caenorhabditis elegans Serpentine
           receptor, class j protein19 protein.
          Length = 337

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 324 FIYIISKSLELISLHYRYISFFKDIFKL 241
           F+Y+I  S  ++  +YRY+S+F  IF L
Sbjct: 25  FVYLIHSSKHVLFGNYRYLSYFFAIFNL 52


>AF016443-12|AAC24279.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 229 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 321 IYIISKSLELISLHYRYISFFKDIFKLH 238
           IY+I K      L Y+Y+  F  +F+LH
Sbjct: 27  IYLIFKKSPKTMLFYKYLLIFTSVFELH 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,428,817
Number of Sequences: 27780
Number of extensions: 116944
Number of successful extensions: 270
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)