Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C10
         (395 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13970.1 68416.m01764 autophagy 12b (APG12b) identical to aut...    53   6e-08
At1g54210.1 68414.m06179 autophagy 12a (APG12a) identical to aut...    53   6e-08

>At3g13970.1 68416.m01764 autophagy 12b (APG12b) identical to
           autophagy 12b [Arabidopsis thaliana],
           gi|19912171|dbj|BAB88397
          Length = 94

 Score = 53.2 bits (122), Expect = 6e-08
 Identities = 22/39 (56%), Positives = 29/39 (74%)
 Frame = +1

Query: 10  LYVNQTFAPSPDQIVKNLYECFGTDGKLVLHYCKSQAWG 126
           +YVN  F+P+PD+ V +LY  FG DGKLV++Y  S AWG
Sbjct: 56  VYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94


>At1g54210.1 68414.m06179 autophagy 12a (APG12a) identical to
           autophagy 12a [Arabidopsis thaliana] GI:19912169
          Length = 96

 Score = 53.2 bits (122), Expect = 6e-08
 Identities = 22/39 (56%), Positives = 29/39 (74%)
 Frame = +1

Query: 10  LYVNQTFAPSPDQIVKNLYECFGTDGKLVLHYCKSQAWG 126
           +YVN  F+P+PD+ V +LY  FG DGKLV++Y  S AWG
Sbjct: 58  VYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,928,052
Number of Sequences: 28952
Number of extensions: 108481
Number of successful extensions: 212
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)