Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C09
(330 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 26 1.3
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 1.3
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 26 1.7
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 25 2.2
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 24 5.2
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 24 5.2
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 24 6.8
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 24 6.8
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 24 6.8
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple... 23 9.0
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 23 9.0
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 23 9.0
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 23 9.0
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 23 9.0
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 23 9.0
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 1.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 111 IPVWSGDASWSLLKQLISGDYPDLLTLVRTYRPRSINPLDEMP 239
I + +A SLL+ L S P +L V R SI+PL+E P
Sbjct: 286 IEIVQSNALPSLLRLLRSSYLPLILASVACIRNISIHPLNESP 328
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 26.2 bits (55), Expect = 1.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 212 SWSVGTNQSKQVGIVSRYQLFEQT 141
+W+ G SK++G V R +F+QT
Sbjct: 507 NWNAGLLYSKRLGPVGRAMIFQQT 530
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 1.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 177 DLLTLVRTYRPRSINPLDEMPAKLSRCGHQRTAHFHVRRQTLDL 308
++L L T RP I+P P +L R + +F R+Q + +
Sbjct: 682 NVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQIVKI 725
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 25.4 bits (53), Expect = 2.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 236 HFVKWVDRSWSVGTNQSKQVGIV 168
H + V R W+ TN SK++GI+
Sbjct: 266 HDISNVPRDWNKVTNYSKRLGII 288
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 24.2 bits (50), Expect = 5.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 16 SVHSRNTYRPRSPVMLLLDLHHGLVICSLLRASRYGLATRHG 141
SVH + PR PV D H+G + + LA+ HG
Sbjct: 346 SVHCWDLRSPRFPVNSFYDWHNGATQVKWNYKNPHILASSHG 387
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 24.2 bits (50), Expect = 5.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 110 HPGMVWRRVMEFAQTADIWRLSRLAYF 190
H G WR V++ QT DI+ LA F
Sbjct: 263 HDGEHWRVVIDSDQTGDIYLHKPLADF 289
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 23.8 bits (49), Expect = 6.8
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -2
Query: 290 SNVKMCCPLMTTARQFSRHFVKWVDRSWSVGTNQS 186
SN KMC +Q F+ W+ S+ + QS
Sbjct: 408 SNAKMCLSDFEKRKQIFAEFIYWLYNSFIIPILQS 442
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 23.8 bits (49), Expect = 6.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 90 YLFSPASIPVWSGDASWSLLKQLISGDYPDLLTLVR 197
+LFS +P GD +++K LI D D L L +
Sbjct: 240 FLFSYGFLPEPEGDRITNVMKLLIPEDSNDSLDLAK 275
>SPAC24C9.12c |||glycine hydroxymethyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 23.8 bits (49), Expect = 6.8
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -2
Query: 293 PSNVKMCCPLMTTARQFSRHFVK---WVDRSWSVGTNQSKQV 177
PS +++ P MTT + FV+ ++DR+ + N K++
Sbjct: 383 PSGIRVGTPAMTTRGFKEQDFVRVVDYIDRALTFAANLQKEL 424
>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 447
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 274 HIFTFDGKHLTFPGQCR 324
HIF FDG+++T + R
Sbjct: 82 HIFQFDGQYITLNSEFR 98
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 23.4 bits (48), Expect = 9.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 141 SLLKQLISGDYPDLLTLVRTYRPRSINPLDEMPAKLSRCG 260
+L K +I D DLL + PRSIN + ++P L G
Sbjct: 366 ALSKHIIFFDL-DLLNNISFPIPRSINAIQQLPCFLIDTG 404
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 103 LRASRYGLATRHGVCSNS*YLETIPTCLLW 192
+R SRY T H ++ + E+I L+W
Sbjct: 361 VRISRYPFPTVHSTEEDADWFESIKRTLMW 390
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 23.4 bits (48), Expect = 9.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 281 KMCCPLMTTARQFSRHFVKWVDRSWSVGTNQSKQ 180
KMC TT +F RHF +++ S + T +++
Sbjct: 459 KMCPLCCTTLSKFVRHFFMFLNDSVILATEVNEK 492
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 23.4 bits (48), Expect = 9.0
Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Frame = +3
Query: 90 YLFSPASIPVWSGDASWSLLKQLISGDYPDL-----LTLVRTYRPRSINPLDEMPAKLSR 254
YL S V D K+LI+GDY D L +R Y I P
Sbjct: 558 YLLSVLLATVRDHDGVLQTWKKLITGDYEDRRFNDGLIKIREYLVNDIEPSTFWEFTTWL 617
Query: 255 CGHQRT 272
C H T
Sbjct: 618 CKHDAT 623
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 23.4 bits (48), Expect = 9.0
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 119 MVWR-RVMEFAQTADIWRLSRLAYFGSYLQTT 211
+ WR RV + ++ LSR+ Y GS+L T
Sbjct: 202 VAWRVRVKPTVRNSNASLLSRIDYLGSFLLVT 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,293
Number of Sequences: 5004
Number of extensions: 29058
Number of successful extensions: 93
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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