Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C09
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1676 - 35302498-35302836,35302911-35302997,35303063-353032... 30 0.38
09_02_0233 + 6113335-6113416,6113550-6113596,6114129-6114419,611... 29 1.2
04_01_0197 + 2323790-2324098,2324145-2324774 29 1.2
09_06_0123 - 20997498-20997512,20998015-20998100,20999066-209991... 28 1.5
08_02_0311 - 15635165-15635590,15635777-15638698 28 1.5
06_01_0245 - 1849156-1849197,1849300-1849341,1849564-1849605,184... 28 1.5
03_02_0373 - 7865708-7866310,7869547-7870443 28 1.5
06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258 27 2.7
03_02_0434 + 8403630-8405666 27 3.6
09_06_0217 + 21629666-21629921,21630691-21630878,21630979-216310... 27 4.7
09_02_0539 - 10408398-10409552 27 4.7
10_08_0513 + 18460095-18460170,18460362-18460441,18461029-184614... 26 6.2
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 26 6.2
07_03_0834 - 21848064-21849752,21851121-21851850,21852617-21852705 26 6.2
01_06_1480 - 37660591-37660720,37660899-37660930,37661061-376611... 26 6.2
10_01_0159 - 1807806-1809386 26 8.3
04_03_0558 + 17111138-17111996,17112474-17112564,17112647-171132... 26 8.3
01_01_1115 + 8828544-8828620,8829608-8829779,8829873-8830183,883... 26 8.3
01_01_1113 - 8815890-8816609,8816656-8817318 26 8.3
>04_04_1676 -
35302498-35302836,35302911-35302997,35303063-35303286,
35303375-35303675,35303762-35303860,35304895-35305032,
35305108-35305326
Length = 468
Score = 30.3 bits (65), Expect = 0.38
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 69 GPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDY 173
G + + YLF PA +P GD W LLK +I+ ++
Sbjct: 192 GGSGLSKYLFPPAKMPKGGGD--WPLLKDMIAQNH 224
>09_02_0233 +
6113335-6113416,6113550-6113596,6114129-6114419,
6114651-6114668
Length = 145
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -2
Query: 296 LPSNVKMCCPL--MTTARQFSRHFVKWVDRSW 207
+P NV + + M AR HFVKWVD W
Sbjct: 26 IPDNVPIDSMIKKMQDARWVKCHFVKWVDPEW 57
>04_01_0197 + 2323790-2324098,2324145-2324774
Length = 312
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 144 LLKQLISGDYPDLLTLV-RTYRPRSIN-PLDEMPAKLSRCGHQRTAHFHVR 290
L +L+SGDYPD LV ++ R + + L+ +L+ C Q+ A+ VR
Sbjct: 210 LFVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKRRLANCRSQQGANQRVR 260
>09_06_0123 -
20997498-20997512,20998015-20998100,20999066-20999198,
20999264-20999341,21000130-21000216,21001164-21001254,
21001338-21001488,21001567-21002296,21002404-21002820
Length = 595
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +3
Query: 54 GYAASGPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDYPDLL--TLVRTYRPRSI-NP 224
G GP SW + S A+ W AS LK L G P +V + +P + NP
Sbjct: 96 GIMGGGPGSWPALAESAAARGSWPKSASSDSLKSLSDGSAPSASEDLIVPSVQPHPVANP 155
Query: 225 L 227
+
Sbjct: 156 I 156
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 205 DHDRSTHLTKCLLNCRAVVINGQHIFTFDGKH 300
DH++ L+ C AV+ NG + FD H
Sbjct: 610 DHNKKAGAMNALVRCSAVMSNGPFMLNFDCDH 641
>06_01_0245 -
1849156-1849197,1849300-1849341,1849564-1849605,
1849697-1849824,1850078-1850285,1850381-1850561,
1851761-1852114,1852577-1852803
Length = 407
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 162 SGDYPDLLTLVRTYRPRSINPLDEMPAKLS-RCGHQRTAH 278
+G +P L YRPR+ P D +P LS +C + +AH
Sbjct: 46 AGPFPTSDELYHHYRPRT-TPSDPVPPPLSSQCSYPESAH 84
>03_02_0373 - 7865708-7866310,7869547-7870443
Length = 499
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 95 VLSCEHPGMVWRRVMEFAQTADIWRLSRLA 184
+L EHPG+ WR + F+ TA++ RLA
Sbjct: 118 LLGLEHPGVRWRAIRRFS-TAELLAPRRLA 146
>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
Length = 700
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 66 SGPTSWTSYLFSPASI--PVWSGDASWSLLKQLISGDYPDLLTLVRTYRPRSINPLDEMP 239
S SW S + P+ ++ W LL+ +S D PDLL V+ P + + MP
Sbjct: 345 SSRISWFMGTVSAVQVADPIRWPNSPWRLLQ--VSWDEPDLLQNVKRVSPWLVELVSNMP 402
Query: 240 A 242
A
Sbjct: 403 A 403
>03_02_0434 + 8403630-8405666
Length = 678
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 156 LISGDYPDLLTLVRTYRPRSINPLDEMPAKLSRCGHQRTAHFHVRRQ 296
+I+ PD++ + R + LD+MP L+ A FH+ +Q
Sbjct: 320 IIAKCLPDIVKQINDRLSRHSSELDQMPPDLNNVADAVRAFFHIVKQ 366
>09_06_0217 +
21629666-21629921,21630691-21630878,21630979-21631042,
21631150-21631232,21631627-21631710,21631811-21631963,
21632150-21632335,21632596-21632663,21632896-21632992
Length = 392
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 57 YAASGPTSWTSYLFSPASIPVWSGDASWSLLK---QLISGDY 173
YAA TS T + +P+ +GD S+LK +LI+G +
Sbjct: 291 YAAENNTSLTRIMLDNMVVPLGNGDIDVSMLKDAVELINGRF 332
>09_02_0539 - 10408398-10409552
Length = 384
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +1
Query: 196 VPTDHDR--STHLTKCLLNCRAVVIN 267
+P D DR T+ T+CLL+C+ IN
Sbjct: 152 LPFDQDRFLRTNYTRCLLSCKPTDIN 177
>10_08_0513 +
18460095-18460170,18460362-18460441,18461029-18461491,
18461914-18462073,18462177-18462451,18462634-18462801,
18463012-18463064
Length = 424
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 124 LATRHGVCSNS*YL-ETIPTCLLWFVPTDHDRSTHLTKCLLNCR 252
L T + +C+ S +L + +P+C + D+D++ C CR
Sbjct: 206 LMTWNVICTYSQFLAQKVPSCCVSLSSFDNDKTVDCPTCSCGCR 249
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 118 YGLATRHGVCSNS*YLETIPTC--LLWFVPTDHDRSTHLTKCLLNCR 252
YG + C N+ + +P C L F P + +R T+ LL CR
Sbjct: 621 YGYCGPNSYCDNT---DAVPACKCLDGFEPREEERRTNNRSFLLGCR 664
>07_03_0834 - 21848064-21849752,21851121-21851850,21852617-21852705
Length = 835
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 205 DHDRSTHLTKCLLNCRAVVINGQHIFTFDGKH 300
DH + L A++ N IF FDG H
Sbjct: 319 DHQKKAGAMNAQLRVSALLSNAPFIFNFDGDH 350
>01_06_1480 -
37660591-37660720,37660899-37660930,37661061-37661155,
37661460-37661527,37661608-37661694,37662884-37662912,
37663019-37663138,37663854-37663905,37663986-37664050,
37664174-37664536,37664637-37664711,37664803-37664940,
37665025-37665181,37665471-37665478,37665576-37665710,
37665965-37666082,37666791-37666915,37667571-37667717,
37668297-37668380,37668671-37668800,37669196-37669347,
37669678-37669857,37670660-37670731,37671104-37671295,
37671366-37671411,37671498-37671647,37671725-37671882,
37671995-37672101,37672191-37672407,37672484-37672696,
37672852-37672972,37673072-37673253,37673475-37673672,
37674770-37674967
Length = 1447
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 317 CPGKVKCLPSNVKMCCPLMTTARQFSRHFVK 225
C ++ CL + VK C P +T R HF+K
Sbjct: 846 CSTEIYCLKTLVKSCLP-RSTVRDRIEHFLK 875
>10_01_0159 - 1807806-1809386
Length = 526
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Frame = +3
Query: 72 PTSWTSYLF-SPASIPVWSGDASW 140
P W + SP+S+P W D W
Sbjct: 413 PAKWVRAMACSPSSVPDWDSDQGW 436
>04_03_0558 +
17111138-17111996,17112474-17112564,17112647-17113268,
17113378-17113457,17113871-17113937,17114138-17114263,
17114333-17114415,17115334-17115777,17115834-17115927,
17116038-17116124,17116474-17116594,17116671-17116709,
17116828-17116997
Length = 960
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 3 TRAAFSSLSQYIPSQVTGYAASGPTSWTSYLFSP 104
TRAA S++ + +P + Y PT+ + +F P
Sbjct: 176 TRAAASAVDEVLPGALVLYGDGEPTTQAARMFVP 209
>01_01_1115 +
8828544-8828620,8829608-8829779,8829873-8830183,
8830934-8830983,8832349-8832405,8832742-8832761,
8834637-8835236,8835283-8836002
Length = 668
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 1 ARGQRSVHSRNTYRPRSP 54
A G R H R+ +RPRSP
Sbjct: 393 AAGARPNHDRSVFRPRSP 410
>01_01_1113 - 8815890-8816609,8816656-8817318
Length = 460
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 1 ARGQRSVHSRNTYRPRSP 54
A G R H R+ +RPRSP
Sbjct: 185 AAGARPNHDRSVFRPRSP 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,166,606
Number of Sequences: 37544
Number of extensions: 210152
Number of successful extensions: 562
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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